Wall clock time and date at job start Mon Mar 30 2020 01:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35457 * 126.77579 * 2 1 4 4 C 1.41383 * 103.98511 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80098 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.54826 * 351.42484 * 5 4 3 7 7 H 1.07998 * 120.00196 * 264.92437 * 6 5 4 8 8 C 1.37884 * 119.99698 * 84.93140 * 6 5 4 9 9 N 1.31514 * 120.00019 * 179.02789 * 8 6 5 10 10 Si 1.86801 * 119.99938 * 359.02440 * 8 6 5 11 11 H 1.48496 * 109.46824 * 90.61361 * 10 8 6 12 12 H 1.48499 * 109.47141 * 210.61201 * 10 8 6 13 13 H 1.48502 * 109.46978 * 330.61136 * 10 8 6 14 14 C 1.53002 * 117.49608 * 205.76305 * 5 4 3 15 15 C 1.52998 * 117.49812 * 137.10014 * 5 4 3 16 16 N 1.30177 * 106.39446 * 0.02562 * 4 3 2 17 17 O 1.20919 * 111.60500 * 0.02562 * 16 4 3 18 18 H 1.08997 * 109.47693 * 89.99515 * 1 2 3 19 19 H 1.08998 * 109.46916 * 209.99658 * 1 2 3 20 20 H 1.09000 * 109.46764 * 329.99038 * 1 2 3 21 21 H 1.07997 * 128.00725 * 0.24275 * 3 2 1 22 22 H 0.96999 * 119.99970 * 179.97438 * 9 8 6 23 23 H 1.08995 * 117.49981 * 359.97438 * 14 5 4 24 24 H 1.08998 * 117.49701 * 145.02169 * 14 5 4 25 25 H 1.09001 * 117.49539 * 214.97252 * 15 5 4 26 26 H 1.08993 * 117.50133 * 359.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 6 4.8011 2.7884 -0.2034 7 1 4.9109 3.2087 -1.1922 8 6 4.5514 3.6136 0.8726 9 7 4.4657 4.9143 0.6979 10 14 4.3347 2.8841 2.5786 11 1 5.6514 2.8256 3.2627 12 1 3.4052 3.7335 3.3658 13 1 3.7753 1.5133 2.4633 14 6 6.1491 0.6031 -0.5889 15 6 6.0334 0.8009 0.9247 16 7 3.4764 -0.7563 0.0003 17 8 2.3095 -1.0736 -0.0008 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5140 21 1 2.0345 2.1271 0.0036 22 1 4.2897 5.4948 1.4548 23 1 6.0170 -0.4072 -0.9759 24 1 6.8704 1.2212 -1.1234 25 1 6.6787 1.5490 1.3851 26 1 5.8250 -0.0789 1.5333 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770951.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:41 Heat of formation + Delta-G solvation = 61.415424 kcal Electronic energy + Delta-G solvation = -12009.043186 eV Core-core repulsion = 9863.146826 eV Total energy + Delta-G solvation = -2145.896361 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.73636 -38.80497 -34.61572 -34.40776 -33.50289 -28.78297 -27.85135 -24.79502 -23.42774 -22.97957 -20.22217 -18.73779 -18.46404 -17.83116 -16.70836 -15.95368 -15.17012 -14.84771 -14.49717 -14.07405 -13.90478 -13.40182 -13.22618 -12.98188 -12.41587 -12.24828 -12.12030 -11.76861 -11.60775 -11.09957 -10.80496 -10.20613 -9.95971 -8.37811 -6.47629 0.64436 1.27609 1.32336 1.37755 1.48123 2.29936 2.39411 2.89625 3.19763 3.48596 3.73376 4.22092 4.22769 4.35973 4.44746 4.62919 4.69750 4.77365 4.89096 4.95548 4.98881 5.28148 5.31876 5.44049 5.57451 6.20648 6.60888 7.24073 7.51086 8.76662 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034836 B = 0.016872 C = 0.013805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.577218 B = 1659.198049 C = 2027.703046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.038 4.038 3 C -0.237 4.237 4 C 0.059 3.941 5 C 0.034 3.966 6 C -0.484 4.484 7 H 0.044 0.956 8 C 0.047 3.953 9 N -0.932 5.932 10 Si 0.929 3.071 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.257 1.257 14 C -0.149 4.149 15 C -0.178 4.178 16 N -0.408 5.408 17 O 0.085 5.915 18 H 0.105 0.895 19 H 0.102 0.898 20 H 0.100 0.900 21 H 0.159 0.841 22 H 0.271 0.729 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 -9.139 1.325 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C -0.258 4.258 4 C -0.098 4.098 5 C 0.032 3.968 6 C -0.522 4.522 7 H 0.062 0.938 8 C -0.154 4.154 9 N -0.571 5.571 10 Si 0.754 3.246 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.181 1.181 14 C -0.187 4.187 15 C -0.217 4.217 16 N -0.116 5.116 17 O 0.022 5.978 18 H 0.124 0.876 19 H 0.121 0.879 20 H 0.119 0.881 21 H 0.177 0.823 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.274 -10.006 1.408 11.894 hybrid contribution -0.131 1.095 0.651 1.281 sum -6.405 -8.910 2.059 11.165 Atomic orbital electron populations 1.20525 0.80207 1.05866 1.05552 1.25218 0.98008 0.84985 1.01933 1.22467 0.91690 1.01382 1.10294 1.23565 0.98125 0.88808 0.99315 1.17410 0.83057 0.92512 1.03840 1.20141 1.49680 0.87508 0.94883 0.93781 1.25537 0.93222 0.94492 1.02116 1.69983 1.49692 1.04367 1.33025 0.85995 0.78861 0.79364 0.80415 1.19206 1.21174 1.18105 1.22910 1.00207 1.00509 0.95088 1.23032 1.03040 1.02083 0.93497 1.73653 0.97667 1.16629 1.23678 1.84671 1.11169 1.33563 1.68358 0.87623 0.87910 0.88129 0.82299 0.91987 0.88939 0.88388 0.89075 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.25 10.45 71.24 0.74 -0.51 15 2 C -0.04 -1.25 7.49 25.04 0.19 -1.06 15 3 C -0.24 -9.93 10.07 22.40 0.23 -9.70 15 4 C 0.06 2.74 5.55 43.58 0.24 2.98 15 5 C 0.03 1.65 1.34 -53.67 -0.07 1.58 15 6 C -0.48 -27.32 8.87 25.60 0.23 -27.09 15 7 H 0.04 2.75 8.06 -2.91 -0.02 2.73 15 8 C 0.05 2.62 5.47 84.66 0.46 3.09 15 9 N -0.93 -55.81 13.96 21.45 0.30 -55.51 15 10 Si 0.93 44.60 25.06 68.60 1.72 46.32 15 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 13 H -0.26 -12.26 6.21 99.48 0.62 -11.65 15 14 C -0.15 -6.38 9.88 30.62 0.30 -6.08 15 15 C -0.18 -7.86 7.72 30.62 0.24 -7.62 15 16 N -0.41 -17.64 11.97 -49.55 -0.59 -18.23 15 17 O 0.08 3.16 11.20 71.66 0.80 3.97 15 18 H 0.11 1.63 8.14 -2.39 -0.02 1.62 15 19 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.16 6.89 8.03 -2.91 -0.02 6.86 15 22 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 23 H 0.09 3.67 8.13 -2.39 -0.02 3.65 15 24 H 0.10 4.03 8.14 -2.39 -0.02 4.01 15 25 H 0.09 4.02 7.44 -2.39 -0.02 4.00 15 26 H 0.09 3.58 8.14 -2.39 -0.02 3.56 15 Total: -1.00 -65.67 230.13 5.86 -59.81 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.08 Total: 8.07 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 2.56 Total: -44.42 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -0.29 Total: -73.74 kcal Atomic # 8 Polarization: 3.16 SS G_CDS: 0.80 Total: 3.97 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.72 Total: 46.32 kcal Total: -65.67 5.86 -59.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770951.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.223 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds