Wall clock time and date at job start Mon Mar 30 2020 02:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21521 * 120.00016 * 2 1 4 4 C 1.40905 * 120.00244 * 180.02562 * 2 1 3 5 5 C 1.41444 * 126.49423 * 94.67621 * 4 2 1 6 6 C 1.40475 * 126.87419 * 359.94699 * 5 4 2 7 7 H 1.08004 * 120.00380 * 359.97438 * 6 5 4 8 8 C 1.40476 * 120.00217 * 179.97438 * 6 5 4 9 9 N 1.30536 * 119.99883 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00603 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47529 * 89.99518 * 10 8 6 12 12 H 1.48497 * 109.47193 * 210.00174 * 10 8 6 13 13 H 1.48504 * 109.46553 * 329.99697 * 10 8 6 14 14 C 1.42010 * 106.24659 * 179.97438 * 5 4 2 15 15 C 1.34648 * 107.75232 * 359.73884 * 14 5 4 16 16 N 1.36021 * 109.75497 * 0.43373 * 15 14 5 17 17 C 1.46497 * 125.38607 * 179.82220 * 16 15 14 18 18 H 1.09005 * 109.47041 * 185.00966 * 1 2 3 19 19 H 1.09002 * 109.46784 * 305.00843 * 1 2 3 20 20 H 1.08994 * 109.47139 * 65.00904 * 1 2 3 21 21 H 0.96995 * 120.00233 * 180.02562 * 9 8 6 22 22 H 1.08003 * 126.12425 * 180.02562 * 14 5 4 23 23 H 1.07997 * 125.12354 * 180.25974 * 15 14 5 24 24 H 1.09003 * 109.47296 * 264.43784 * 17 16 15 25 25 H 1.09000 * 109.47592 * 144.44005 * 17 16 15 26 26 H 1.09005 * 109.47291 * 24.43520 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0524 0.0000 4 6 2.2116 -1.2202 -0.0005 5 6 2.7125 -1.9019 -1.1342 6 6 2.6056 -1.4988 -2.4756 7 1 2.0967 -0.5792 -2.7242 8 6 3.1606 -2.2917 -3.4937 9 7 3.7762 -3.4029 -3.1932 10 14 3.0191 -1.7553 -5.2774 11 1 4.1894 -0.9144 -5.6358 12 1 2.9839 -2.9539 -6.1534 13 1 1.7714 -0.9713 -5.4609 14 6 3.3446 -3.0757 -0.6448 15 6 3.2256 -3.0773 0.6964 16 7 2.5422 -1.9721 1.0987 17 6 2.2162 -1.6347 2.4865 18 1 -0.3633 -1.0238 0.0897 19 1 -0.3633 0.5896 0.8418 20 1 -0.3633 0.4341 -0.9314 21 1 4.1598 -3.9502 -3.8962 22 1 3.8369 -3.8295 -1.2412 23 1 3.6120 -3.8423 1.3536 24 1 1.2095 -1.9827 2.7181 25 1 2.2665 -0.5540 2.6192 26 1 2.9299 -2.1165 3.1548 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791000.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:18 Heat of formation + Delta-G solvation = -13.005960 kcal Electronic energy + Delta-G solvation = -11851.435192 eV Core-core repulsion = 9702.311678 eV Total energy + Delta-G solvation = -2149.123514 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45564 -39.39649 -35.72280 -32.89416 -31.79319 -29.62796 -28.02466 -25.76105 -22.96815 -21.22438 -19.57872 -18.57649 -17.39850 -16.48919 -16.30487 -15.57503 -15.44627 -15.19495 -14.43156 -13.74349 -13.57211 -13.11980 -13.04410 -12.99161 -12.69930 -12.64427 -12.59269 -11.87448 -11.61182 -11.18791 -10.63301 -9.14558 -8.55385 -8.39041 -6.08996 0.96556 1.27342 1.39398 1.52270 1.68073 2.27940 2.49761 2.70478 3.55153 3.78317 4.18666 4.39350 4.52704 4.53186 4.63084 4.67855 4.88837 5.17492 5.26354 5.39692 5.70744 6.01698 6.27711 6.46322 6.71249 6.91842 7.06807 7.20511 7.24948 8.53664 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.040056 B = 0.013855 C = 0.010968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.849102 B = 2020.403477 C = 2552.315580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.466 3.534 3 O -0.520 6.520 4 C -0.273 4.273 5 C 0.052 3.948 6 C -0.484 4.484 7 H 0.051 0.949 8 C 0.031 3.969 9 N -0.833 5.833 10 Si 0.981 3.019 11 H -0.269 1.269 12 H -0.261 1.261 13 H -0.263 1.263 14 C -0.261 4.261 15 C -0.003 4.003 16 N -0.443 5.443 17 C 0.079 3.921 18 H 0.083 0.917 19 H 0.110 0.890 20 H 0.095 0.905 21 H 0.282 0.718 22 H 0.143 0.857 23 H 0.179 0.821 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 -0.319 5.861 7.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.346 3.654 3 O -0.397 6.397 4 C -0.378 4.378 5 C 0.045 3.955 6 C -0.517 4.517 7 H 0.069 0.931 8 C -0.182 4.182 9 N -0.462 5.462 10 Si 0.802 3.198 11 H -0.195 1.195 12 H -0.185 1.185 13 H -0.187 1.187 14 C -0.289 4.289 15 C -0.135 4.135 16 N -0.126 5.126 17 C -0.062 4.062 18 H 0.102 0.898 19 H 0.128 0.872 20 H 0.114 0.886 21 H 0.092 0.908 22 H 0.161 0.839 23 H 0.197 0.803 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.462 0.178 6.122 7.578 hybrid contribution 0.185 0.056 -0.883 0.904 sum -4.277 0.234 5.239 6.767 Atomic orbital electron populations 1.22213 0.91897 1.04981 1.05017 1.20499 0.92621 0.85626 0.66659 1.90461 1.74071 1.36588 1.38605 1.19469 1.26649 1.02931 0.88758 1.17848 0.93535 0.92880 0.91205 1.18979 1.34413 1.06736 0.91546 0.93069 1.26650 0.92534 0.93875 1.05101 1.69596 1.28754 1.11997 1.35836 0.85232 0.79389 0.78803 0.76352 1.19459 1.18545 1.18743 1.21683 1.11354 1.02417 0.93494 1.21978 1.03011 0.92558 0.95944 1.43241 1.45783 1.18362 1.05167 1.22029 1.03067 1.01552 0.79592 0.89798 0.87185 0.88645 0.90764 0.83932 0.80347 0.89974 0.92070 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.17 10.30 71.24 0.73 -5.44 15 2 C 0.47 21.50 5.98 26.34 0.16 21.66 15 3 O -0.52 -26.92 17.84 -3.78 -0.07 -26.98 15 4 C -0.27 -13.85 6.27 39.74 0.25 -13.60 15 5 C 0.05 3.03 5.98 -21.01 -0.13 2.90 15 6 C -0.48 -28.62 9.17 23.36 0.21 -28.41 15 7 H 0.05 3.02 7.77 -2.91 -0.02 3.00 15 8 C 0.03 1.68 5.50 85.43 0.47 2.15 15 9 N -0.83 -45.60 10.34 21.92 0.23 -45.37 15 10 Si 0.98 41.56 29.56 68.60 2.03 43.59 15 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 13 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 14 C -0.26 -14.11 9.68 22.38 0.22 -13.90 15 15 C 0.00 -0.12 11.28 83.22 0.94 0.82 15 16 N -0.44 -18.94 3.15 -537.60 -1.70 -20.63 15 17 C 0.08 2.30 10.84 127.77 1.39 3.68 15 18 H 0.08 2.69 7.97 -2.38 -0.02 2.67 15 19 H 0.11 2.90 8.14 -2.39 -0.02 2.89 15 20 H 0.10 3.05 8.14 -2.39 -0.02 3.03 15 21 H 0.28 13.91 8.29 -92.71 -0.77 13.14 15 22 H 0.14 8.05 5.82 -2.91 -0.02 8.03 15 23 H 0.18 6.08 8.06 -2.91 -0.02 6.06 15 24 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.06 1.81 7.91 -2.39 -0.02 1.80 15 26 H 0.10 2.34 8.12 -2.38 -0.02 2.32 15 Total: -1.00 -70.85 235.58 5.90 -64.94 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.17 Total: 14.59 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 4.24 Total: -30.14 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -1.47 Total: -66.00 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -70.85 5.90 -64.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791000.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.935 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds