Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34039 * 126.77795 * 2 1 4 4 N 1.20925 * 111.56278 * 179.97438 * 3 2 1 5 5 C 1.30166 * 111.60937 * 359.74555 * 4 3 2 6 6 C 1.35449 * 126.77429 * 179.97438 * 2 1 3 7 7 C 1.50705 * 128.01046 * 359.96839 * 6 2 1 8 8 C 1.50701 * 115.54674 * 295.23613 * 7 6 2 9 9 H 1.07999 * 120.00231 * 95.40770 * 8 7 6 10 10 C 1.37876 * 120.00126 * 275.41371 * 8 7 6 11 11 N 1.31516 * 120.00035 * 355.50529 * 10 8 7 12 12 Si 1.86797 * 120.00182 * 175.22766 * 10 8 7 13 13 H 1.48504 * 109.47254 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47448 * 119.99899 * 12 10 8 15 15 H 1.48506 * 109.47110 * 239.99956 * 12 10 8 16 16 C 1.52994 * 117.50113 * 80.90366 * 7 6 2 17 17 C 1.52997 * 117.50048 * 149.56962 * 7 6 2 18 18 H 1.09001 * 109.47021 * 274.98215 * 1 2 3 19 19 H 1.08998 * 109.47063 * 34.98280 * 1 2 3 20 20 H 1.09000 * 109.47493 * 154.98167 * 1 2 3 21 21 H 1.08005 * 126.80411 * 180.25078 * 5 4 3 22 22 H 0.96996 * 119.99677 * 4.83587 * 11 10 8 23 23 H 1.09000 * 117.49703 * 215.00784 * 16 7 6 24 24 H 1.09004 * 117.49896 * 0.02574 * 16 7 6 25 25 H 1.08993 * 117.50070 * 359.97051 * 17 7 6 26 26 H 1.08999 * 117.49755 * 144.97548 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7562 0.0005 5 6 3.6213 -0.5373 0.0063 6 6 2.3178 -1.0849 0.0005 7 6 1.9223 -2.5392 0.0018 8 6 1.1929 -3.0132 1.2324 9 1 0.1134 -3.0433 1.2423 10 6 1.9037 -3.4083 2.3458 11 7 3.2174 -3.4559 2.3045 12 14 1.0014 -3.8686 3.9152 13 1 -0.4618 -3.7259 3.7050 14 1 1.3156 -5.2752 4.2726 15 1 1.4328 -2.9699 5.0160 16 6 1.5293 -3.1656 -1.3375 17 6 2.8657 -3.5285 -0.6852 18 1 -0.3633 0.0892 1.0238 19 1 -0.3633 0.8420 -0.5892 20 1 -0.3634 -0.9312 -0.4346 21 1 4.5527 -1.0840 0.0118 22 1 3.6893 -3.1466 1.5156 23 1 0.7431 -3.9206 -1.3286 24 1 1.5572 -2.5261 -2.2198 25 1 3.7722 -3.1276 -1.1386 26 1 2.9590 -4.5221 -0.2469 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791883.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = 72.899326 kcal Electronic energy + Delta-G solvation = -12119.758849 eV Core-core repulsion = 9974.360468 eV Total energy + Delta-G solvation = -2145.398381 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.08312 -37.04146 -32.63246 -32.32628 -31.84924 -27.05390 -25.33689 -22.99329 -21.68946 -20.64658 -19.29692 -17.04170 -16.73458 -16.08048 -14.33303 -13.81328 -13.70806 -12.95232 -12.90801 -12.60936 -12.13346 -11.79536 -11.26219 -10.87164 -10.68714 -10.45948 -10.18296 -9.92158 -9.59703 -9.01281 -8.64062 -8.31725 -7.96287 -6.42018 -4.19546 2.27159 3.15246 3.38997 3.42496 3.54704 3.90482 4.43630 4.92898 5.13197 5.30924 5.44395 5.77617 5.90535 6.00031 6.06617 6.21145 6.29654 6.46940 6.52593 6.58767 6.78739 6.83518 7.16225 7.28559 8.12624 8.32377 8.78389 9.01605 9.57578 10.96824 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.035158 B = 0.015030 C = 0.014002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.207194 B = 1862.521529 C = 1999.166552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.057 4.057 3 O 0.079 5.921 4 N -0.386 5.386 5 C -0.009 4.009 6 C -0.120 4.120 7 C 0.082 3.918 8 C -0.569 4.569 9 H 0.058 0.942 10 C 0.029 3.971 11 N -0.901 5.901 12 Si 1.071 2.929 13 H -0.287 1.287 14 H -0.286 1.286 15 H -0.287 1.287 16 C -0.185 4.185 17 C -0.175 4.175 18 H 0.079 0.921 19 H 0.065 0.935 20 H 0.090 0.910 21 H 0.178 0.822 22 H 0.278 0.722 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 3.096 -4.076 6.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 O 0.014 5.986 4 N -0.092 5.092 5 C -0.187 4.187 6 C -0.125 4.125 7 C 0.081 3.919 8 C -0.606 4.606 9 H 0.076 0.924 10 C -0.178 4.178 11 N -0.535 5.535 12 Si 0.899 3.101 13 H -0.213 1.213 14 H -0.212 1.212 15 H -0.214 1.214 16 C -0.223 4.223 17 C -0.213 4.213 18 H 0.098 0.902 19 H 0.084 0.916 20 H 0.108 0.892 21 H 0.195 0.805 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.160 3.558 -2.540 5.394 hybrid contribution -0.251 -0.223 -1.468 1.506 sum -3.411 3.334 -4.008 6.230 Atomic orbital electron populations 1.20095 0.84599 1.03227 1.03199 1.23983 0.95871 0.85506 1.06634 1.84639 1.11485 1.33629 1.68856 1.73719 0.97572 1.17059 1.20874 1.24833 1.00282 0.90048 1.03545 1.21149 0.90633 0.97748 1.02933 1.17109 0.98844 0.83581 0.92342 1.21265 0.93712 1.48300 0.97318 0.92365 1.25812 0.96374 0.94059 1.01543 1.70657 1.07598 1.41875 1.33336 0.83514 0.74623 0.76828 0.75111 1.21311 1.21229 1.21353 1.22915 0.99068 1.03955 0.96335 1.22816 0.92030 1.01674 1.04769 0.90204 0.91630 0.89162 0.80453 0.91089 0.89622 0.91406 0.91454 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.87 10.33 36.00 0.37 -0.50 15 2 C -0.06 -1.18 7.49 -35.31 -0.26 -1.44 15 3 O 0.08 1.65 11.20 17.18 0.19 1.84 15 4 N -0.39 -8.45 12.07 30.36 0.37 -8.09 15 5 C -0.01 -0.21 11.80 -17.06 -0.20 -0.41 15 6 C -0.12 -2.75 5.43 -104.42 -0.57 -3.32 15 7 C 0.08 1.96 1.21 -156.81 -0.19 1.77 15 8 C -0.57 -14.97 8.82 -34.44 -0.30 -15.27 15 9 H 0.06 1.52 7.82 -52.49 -0.41 1.11 15 10 C 0.03 0.79 5.43 -17.82 -0.10 0.69 15 11 N -0.90 -26.03 13.51 55.43 0.75 -25.28 15 12 Si 1.07 24.37 29.91 -169.99 -5.08 19.28 15 13 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 15 H -0.29 -6.55 7.11 56.52 0.40 -6.14 15 16 C -0.19 -3.87 9.94 -26.69 -0.27 -4.14 15 17 C -0.18 -3.93 8.11 -26.69 -0.22 -4.15 15 18 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.09 1.49 7.94 -51.93 -0.41 1.08 15 21 H 0.18 3.66 8.06 -52.48 -0.42 3.24 15 22 H 0.28 7.90 6.22 -40.82 -0.25 7.64 15 23 H 0.09 1.74 8.14 -51.93 -0.42 1.31 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.07 1.40 7.98 -51.93 -0.41 0.99 15 26 H 0.09 2.14 8.14 -51.93 -0.42 1.72 15 LS Contribution 235.29 15.07 3.55 3.55 Total: -1.00 -29.35 235.29 -4.79 -34.14 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -2.82 Total: 1.34 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -1.73 Total: -26.77 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 1.12 Total: -33.37 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.19 Total: 1.84 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.35 -4.79 -34.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791883.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.038 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds