Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34039 * 126.77795 * 2 1 4 4 N 1.20925 * 111.56278 * 179.97438 * 3 2 1 5 5 C 1.30166 * 111.60937 * 359.74555 * 4 3 2 6 6 C 1.35449 * 126.77429 * 179.97438 * 2 1 3 7 7 C 1.50705 * 128.01046 * 359.96839 * 6 2 1 8 8 C 1.50701 * 115.54674 * 295.23613 * 7 6 2 9 9 H 1.07999 * 120.00231 * 95.40770 * 8 7 6 10 10 C 1.37876 * 120.00126 * 275.41371 * 8 7 6 11 11 N 1.31516 * 120.00035 * 355.50529 * 10 8 7 12 12 Si 1.86797 * 120.00182 * 175.22766 * 10 8 7 13 13 H 1.48504 * 109.47254 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47448 * 119.99899 * 12 10 8 15 15 H 1.48506 * 109.47110 * 239.99956 * 12 10 8 16 16 C 1.52994 * 117.50113 * 80.90366 * 7 6 2 17 17 C 1.52997 * 117.50048 * 149.56962 * 7 6 2 18 18 H 1.09001 * 109.47021 * 274.98215 * 1 2 3 19 19 H 1.08998 * 109.47063 * 34.98280 * 1 2 3 20 20 H 1.09000 * 109.47493 * 154.98167 * 1 2 3 21 21 H 1.08005 * 126.80411 * 180.25078 * 5 4 3 22 22 H 0.96996 * 119.99677 * 4.83587 * 11 10 8 23 23 H 1.09000 * 117.49703 * 215.00784 * 16 7 6 24 24 H 1.09004 * 117.49896 * 0.02574 * 16 7 6 25 25 H 1.08993 * 117.50070 * 359.97051 * 17 7 6 26 26 H 1.08999 * 117.49755 * 144.97548 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7562 0.0005 5 6 3.6213 -0.5373 0.0063 6 6 2.3178 -1.0849 0.0005 7 6 1.9223 -2.5392 0.0018 8 6 1.1929 -3.0132 1.2324 9 1 0.1134 -3.0433 1.2423 10 6 1.9037 -3.4083 2.3458 11 7 3.2174 -3.4559 2.3045 12 14 1.0014 -3.8686 3.9152 13 1 -0.4618 -3.7259 3.7050 14 1 1.3156 -5.2752 4.2726 15 1 1.4328 -2.9699 5.0160 16 6 1.5293 -3.1656 -1.3375 17 6 2.8657 -3.5285 -0.6852 18 1 -0.3633 0.0892 1.0238 19 1 -0.3633 0.8420 -0.5892 20 1 -0.3634 -0.9312 -0.4346 21 1 4.5527 -1.0840 0.0118 22 1 3.6893 -3.1466 1.5156 23 1 0.7431 -3.9206 -1.3286 24 1 1.5572 -2.5261 -2.2198 25 1 3.7722 -3.1276 -1.1386 26 1 2.9590 -4.5221 -0.2469 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791883.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = 56.438150 kcal Electronic energy + Delta-G solvation = -12120.472660 eV Core-core repulsion = 9974.360468 eV Total energy + Delta-G solvation = -2146.112191 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.76906 -38.82347 -34.38509 -33.93474 -33.74175 -28.52990 -27.32385 -24.77887 -23.38131 -22.36374 -21.11570 -18.87643 -18.45243 -17.74787 -16.09086 -15.63757 -15.39958 -14.72806 -14.58825 -13.94536 -13.87596 -13.35760 -12.97350 -12.69552 -12.34587 -12.15710 -11.90406 -11.66565 -11.37374 -10.81810 -10.53315 -10.22545 -9.67327 -8.51076 -6.28861 0.62775 1.42528 1.56416 1.63957 1.78538 2.32043 2.58476 3.17992 3.25667 3.47389 3.91694 4.16344 4.21369 4.41275 4.64943 4.75571 4.78118 4.80349 4.83407 5.02974 5.15108 5.26607 5.44442 5.51402 6.15266 6.27186 6.71064 7.35238 7.55188 8.88549 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.035158 B = 0.015030 C = 0.014002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.207194 B = 1862.521529 C = 1999.166552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.045 4.045 3 O 0.085 5.915 4 N -0.396 5.396 5 C -0.021 4.021 6 C -0.152 4.152 7 C 0.061 3.939 8 C -0.571 4.571 9 H 0.057 0.943 10 C -0.019 4.019 11 N -0.934 5.934 12 Si 1.110 2.890 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.290 1.290 16 C -0.160 4.160 17 C -0.180 4.180 18 H 0.087 0.913 19 H 0.104 0.896 20 H 0.089 0.911 21 H 0.183 0.817 22 H 0.269 0.731 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 3.679 -4.465 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 O 0.020 5.980 4 N -0.102 5.102 5 C -0.198 4.198 6 C -0.156 4.156 7 C 0.060 3.940 8 C -0.608 4.608 9 H 0.075 0.925 10 C -0.220 4.220 11 N -0.570 5.570 12 Si 0.934 3.066 13 H -0.189 1.189 14 H -0.209 1.209 15 H -0.217 1.217 16 C -0.197 4.197 17 C -0.217 4.217 18 H 0.106 0.894 19 H 0.122 0.878 20 H 0.107 0.893 21 H 0.200 0.800 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.691 4.146 -2.951 6.922 hybrid contribution 0.191 -0.368 -1.407 1.467 sum -4.500 3.778 -4.359 7.316 Atomic orbital electron populations 1.20306 0.81526 1.04889 1.04414 1.24681 0.97494 0.84633 1.04007 1.84626 1.11278 1.33676 1.68408 1.73701 0.98162 1.16836 1.21463 1.25002 1.00715 0.90322 1.03761 1.21140 0.91340 0.97792 1.05340 1.17095 0.99844 0.84267 0.92789 1.21560 0.93850 1.47211 0.98197 0.92457 1.27006 0.96412 0.94091 1.04495 1.70756 1.08624 1.44254 1.33380 0.83010 0.74965 0.76551 0.72091 1.18920 1.20928 1.21659 1.22941 0.97784 1.03313 0.95688 1.22710 0.93392 1.00337 1.05280 0.89443 0.87789 0.89251 0.80006 0.92008 0.89063 0.89192 0.90394 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.59 10.33 71.23 0.74 -0.85 15 2 C -0.04 -1.75 7.49 25.04 0.19 -1.57 15 3 O 0.08 3.38 11.20 71.64 0.80 4.18 15 4 N -0.40 -16.91 12.07 -59.26 -0.72 -17.62 15 5 C -0.02 -0.92 11.80 85.71 1.01 0.10 15 6 C -0.15 -6.75 5.43 -19.73 -0.11 -6.86 15 7 C 0.06 2.84 1.21 -53.68 -0.06 2.78 15 8 C -0.57 -29.55 8.82 25.60 0.23 -29.33 15 9 H 0.06 2.90 7.82 -2.91 -0.02 2.88 15 10 C -0.02 -1.05 5.43 84.65 0.46 -0.59 15 11 N -0.93 -54.55 13.51 21.45 0.29 -54.26 15 12 Si 1.11 48.45 29.91 68.60 2.05 50.50 15 13 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 15 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 16 C -0.16 -6.38 9.94 30.62 0.30 -6.07 15 17 C -0.18 -8.00 8.11 30.62 0.25 -7.75 15 18 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 19 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.09 2.67 7.94 -2.39 -0.02 2.65 15 21 H 0.18 7.59 8.06 -2.91 -0.02 7.56 15 22 H 0.27 15.62 6.22 -92.71 -0.58 15.04 15 23 H 0.09 3.50 8.14 -2.39 -0.02 3.49 15 24 H 0.09 3.18 8.14 -2.38 -0.02 3.16 15 25 H 0.08 3.24 7.98 -2.39 -0.02 3.22 15 26 H 0.07 3.25 8.14 -2.39 -0.02 3.23 15 Total: -1.00 -61.36 235.29 6.79 -54.57 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.36 Total: 12.77 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 3.00 Total: -50.15 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -0.43 Total: -71.88 kcal Atomic # 8 Polarization: 3.38 SS G_CDS: 0.80 Total: 4.18 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Total: -61.36 6.79 -54.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791883.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.009 kcal (2) G-P(sol) polarization free energy of solvation -61.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds