Wall clock time and date at job start Mon Mar 30 2020 01:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34475 * 126.16254 * 2 1 4 4 C 1.30256 * 108.69985 * 180.02562 * 3 2 1 5 5 O 1.33971 * 108.76086 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.16302 * 179.69055 * 2 1 3 7 7 C 1.50693 * 126.44775 * 359.97438 * 6 2 1 8 8 C 1.50699 * 115.55303 * 63.87813 * 7 6 2 9 9 H 1.08008 * 119.99789 * 269.31910 * 8 7 6 10 10 C 1.37867 * 120.00361 * 89.31038 * 8 7 6 11 11 N 1.31509 * 120.00454 * 175.85820 * 10 8 7 12 12 Si 1.86802 * 119.99915 * 355.86227 * 10 8 7 13 13 H 1.48502 * 109.47460 * 84.85823 * 12 10 8 14 14 H 1.48499 * 109.47261 * 204.85918 * 12 10 8 15 15 H 1.48500 * 109.47216 * 324.85889 * 12 10 8 16 16 C 1.53004 * 117.49692 * 278.21035 * 7 6 2 17 17 C 1.53007 * 117.49920 * 209.54989 * 7 6 2 18 18 H 1.09000 * 109.47339 * 95.18242 * 1 2 3 19 19 H 1.09000 * 109.46820 * 215.18318 * 1 2 3 20 20 H 1.09003 * 109.47207 * 335.17973 * 1 2 3 21 21 H 1.07997 * 125.62478 * 179.97438 * 4 3 2 22 22 H 0.97006 * 120.00768 * 180.02562 * 11 10 8 23 23 H 1.08997 * 117.49767 * 359.97438 * 16 7 6 24 24 H 1.09000 * 117.49887 * 145.02120 * 16 7 6 25 25 H 1.08996 * 117.49646 * 214.97813 * 17 7 6 26 26 H 1.09001 * 117.49680 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6948 -0.0006 5 8 3.5734 -0.6446 -0.0003 6 6 2.2997 -1.0845 0.0059 7 6 1.8493 -2.5225 0.0142 8 6 1.0833 -2.9708 -1.2038 9 1 0.0066 -2.8883 -1.2251 10 6 1.7569 -3.4861 -2.2907 11 7 1.0847 -3.9525 -3.3203 12 14 3.6246 -3.5218 -2.3011 13 1 4.1002 -4.7434 -1.6034 14 1 4.1117 -3.5316 -3.7038 15 1 4.1466 -2.3189 -1.6042 16 6 1.4537 -3.1311 1.3611 17 6 2.7651 -3.5457 0.6890 18 1 -0.3634 -0.0928 -1.0234 19 1 -0.3633 -0.8399 0.5921 20 1 -0.3634 0.9328 0.4314 21 1 4.4065 1.3434 -0.0011 22 1 1.5586 -4.3154 -4.0850 23 1 1.5196 -2.4914 2.2411 24 1 0.6397 -3.8560 1.3662 25 1 2.8132 -4.5432 0.2522 26 1 3.6935 -3.1788 1.1265 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807387.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:03 Heat of formation + Delta-G solvation = 21.579483 kcal Electronic energy + Delta-G solvation = -12168.836424 eV Core-core repulsion = 10021.212647 eV Total energy + Delta-G solvation = -2147.623777 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.10689 -38.50828 -35.92183 -34.33827 -32.07809 -28.46954 -27.75074 -24.14990 -23.27504 -22.30341 -20.96422 -18.89517 -17.61692 -17.53744 -16.68322 -16.03473 -15.46778 -14.84530 -14.55614 -14.06320 -13.70025 -13.22362 -13.03993 -12.87586 -12.52904 -12.16924 -11.90189 -11.79164 -11.45302 -11.28054 -10.86270 -10.54662 -9.30792 -8.38908 -6.47738 0.74262 1.28745 1.34489 1.48984 1.84731 1.98199 2.31246 3.01086 3.10593 3.45891 3.90557 4.15354 4.28482 4.31363 4.61989 4.76921 4.84011 4.94219 4.98573 5.06603 5.20682 5.32549 5.39623 5.55944 5.64280 6.19843 6.61689 6.91306 7.23055 8.74371 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.017383 C = 0.016414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.765957 B = 1610.399990 C = 1705.426261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.045 4.045 3 N -0.511 5.511 4 C 0.148 3.852 5 O -0.219 6.219 6 C 0.003 3.997 7 C 0.040 3.960 8 C -0.477 4.477 9 H 0.053 0.947 10 C 0.034 3.966 11 N -0.933 5.933 12 Si 0.924 3.076 13 H -0.256 1.256 14 H -0.299 1.299 15 H -0.243 1.243 16 C -0.134 4.134 17 C -0.191 4.191 18 H 0.057 0.943 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.292 0.708 22 H 0.269 0.731 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 5.071 8.245 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.163 4.163 3 N -0.241 5.241 4 C -0.078 4.078 5 O -0.106 6.106 6 C -0.050 4.050 7 C 0.038 3.962 8 C -0.514 4.514 9 H 0.072 0.928 10 C -0.166 4.166 11 N -0.571 5.571 12 Si 0.749 3.251 13 H -0.181 1.181 14 H -0.226 1.226 15 H -0.167 1.167 16 C -0.171 4.171 17 C -0.228 4.228 18 H 0.076 0.924 19 H 0.094 0.906 20 H 0.098 0.902 21 H 0.307 0.693 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.134 5.584 8.072 11.077 hybrid contribution 0.933 -0.720 -0.738 1.390 sum 6.067 4.864 7.335 10.689 Atomic orbital electron populations 1.19916 0.86038 1.02780 1.02111 1.21571 0.98750 0.87446 1.08531 1.70233 1.02418 1.32118 1.19335 1.28925 0.98285 0.79596 1.01013 1.84499 1.30852 1.25247 1.70039 1.23485 0.80015 0.97854 1.03650 1.17394 1.01012 0.82895 0.94900 1.20246 0.93364 1.39697 0.98094 0.92846 1.25721 1.02650 0.93635 0.94635 1.69985 1.37968 1.41300 1.07851 0.86071 0.81296 0.81078 0.76669 1.18069 1.22636 1.16661 1.22994 0.97874 1.02424 0.93780 1.23084 0.94751 0.99885 1.05074 0.92438 0.90639 0.90200 0.69294 0.92213 0.88062 0.87844 0.89391 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.91 10.10 71.24 0.72 -1.19 15 2 C -0.04 -1.89 7.11 41.26 0.29 -1.59 15 3 N -0.51 -19.71 11.29 -304.07 -3.43 -23.15 15 4 C 0.15 4.82 13.23 130.48 1.73 6.54 15 5 O -0.22 -8.78 9.52 -3.83 -0.04 -8.82 15 6 C 0.00 0.13 5.82 24.79 0.14 0.27 15 7 C 0.04 1.78 0.92 -53.67 -0.05 1.73 15 8 C -0.48 -25.94 9.33 25.60 0.24 -25.71 15 9 H 0.05 3.17 8.06 -2.91 -0.02 3.15 15 10 C 0.03 1.90 5.47 84.65 0.46 2.36 15 11 N -0.93 -56.47 13.96 21.44 0.30 -56.17 15 12 Si 0.92 44.06 25.14 68.60 1.72 45.79 15 13 H -0.26 -11.41 6.94 99.48 0.69 -10.72 15 14 H -0.30 -14.44 7.11 99.48 0.71 -13.73 15 15 H -0.24 -11.26 5.49 99.48 0.55 -10.71 15 16 C -0.13 -4.94 9.94 30.62 0.30 -4.63 15 17 C -0.19 -7.57 7.63 30.62 0.23 -7.33 15 18 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 19 H 0.07 2.71 8.02 -2.39 -0.02 2.69 15 20 H 0.08 2.55 8.14 -2.39 -0.02 2.53 15 21 H 0.29 5.47 8.06 -2.91 -0.02 5.44 15 22 H 0.27 15.35 8.31 -92.70 -0.77 14.58 15 23 H 0.10 3.24 8.14 -2.39 -0.02 3.22 15 24 H 0.10 3.70 8.14 -2.39 -0.02 3.68 15 25 H 0.09 3.62 7.07 -2.39 -0.02 3.60 15 26 H 0.09 3.43 8.14 -2.39 -0.02 3.41 15 Total: -1.00 -66.10 229.22 3.62 -62.48 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.99 Total: 9.41 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 4.07 Total: -29.55 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -3.13 Total: -79.32 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.04 Total: -8.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.72 Total: 45.79 kcal Total: -66.10 3.62 -62.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807387.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.062 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds