Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48501 * 109.46784 * 239.99666 * 3 2 1 5 5 H 1.48493 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47132 * 119.99936 * 3 2 1 7 7 C 1.37872 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99570 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00497 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47575 * 179.97438 * 10 9 7 12 12 C 1.38808 * 119.99003 * 125.00316 * 11 10 9 13 13 C 1.38566 * 118.03911 * 179.97438 * 12 11 10 14 14 C 1.39487 * 117.90227 * 359.97438 * 13 12 11 15 15 N 1.39045 * 120.15585 * 180.02562 * 14 13 12 16 16 N 1.32493 * 119.68338 * 0.27894 * 14 13 12 17 17 N 1.28348 * 122.07063 * 359.42152 * 16 14 13 18 18 H 0.96991 * 120.00181 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.47083 * 60.00160 * 9 7 2 20 20 H 1.08998 * 109.47452 * 300.00493 * 9 7 2 21 21 H 1.09008 * 109.46491 * 60.00147 * 10 9 7 22 22 H 1.08998 * 109.47410 * 300.00868 * 10 9 7 23 23 H 1.07997 * 120.98372 * 359.97438 * 12 11 10 24 24 H 1.07994 * 121.05374 * 180.02562 * 13 12 11 25 25 H 0.96999 * 120.00136 * 0.02562 * 15 14 13 26 26 H 0.97005 * 119.99755 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4920 -4.9672 0.0033 12 6 1.7413 -5.9136 -0.9811 13 6 1.0259 -7.0997 -0.9405 14 6 0.0996 -7.2683 0.0887 15 7 -0.6434 -8.4404 0.1745 16 7 -0.0725 -6.3042 0.9810 17 7 0.5976 -5.2103 0.9403 18 1 -0.4850 0.8400 -0.0004 19 1 0.6242 -2.5575 -0.8881 20 1 0.6248 -2.5563 0.8919 21 1 2.8727 -3.6038 0.8910 22 1 2.8715 -3.6047 -0.8889 23 1 2.4712 -5.7310 -1.7558 24 1 1.1813 -7.8696 -1.6817 25 1 -0.5180 -9.1434 -0.4820 26 1 -1.2873 -8.5551 0.8909 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = 43.132351 kcal Electronic energy + Delta-G solvation = -11231.042190 eV Core-core repulsion = 9116.645767 eV Total energy + Delta-G solvation = -2114.396423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.53347 -35.59534 -33.85424 -32.68039 -31.30219 -28.74650 -25.49349 -23.98320 -22.65154 -20.56195 -17.72058 -17.24856 -16.36737 -15.51506 -14.88008 -14.72687 -14.31550 -13.46813 -13.04257 -12.71931 -12.08975 -11.44951 -11.11800 -10.86855 -10.65250 -10.48448 -9.97756 -9.77951 -9.42381 -9.04567 -9.02892 -8.26674 -7.89077 -5.91618 -3.94858 1.20966 1.60874 3.38429 3.42760 3.44920 3.50430 4.08291 4.51574 4.69130 4.93629 5.05131 5.23894 5.43647 5.53601 5.97127 6.07495 6.47611 6.56048 6.70321 7.07994 7.23908 7.60542 7.76190 7.93789 8.10973 8.47343 9.12159 9.35330 9.68335 11.19540 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.089350 B = 0.007155 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.299505 B = 3912.555719 C = 4079.864724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.058 4.058 11 C 0.045 3.955 12 C -0.081 4.081 13 C -0.185 4.185 14 C 0.318 3.682 15 N -0.850 5.850 16 N -0.308 5.308 17 N -0.194 5.194 18 H 0.261 0.739 19 H 0.012 0.988 20 H 0.031 0.969 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.146 0.854 24 H 0.138 0.862 25 H 0.404 0.596 26 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -14.987 -3.025 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.097 4.097 11 C -0.104 4.104 12 C -0.110 4.110 13 C -0.218 4.218 14 C 0.076 3.924 15 N -0.397 5.397 16 N -0.158 5.158 17 N -0.035 5.035 18 H 0.070 0.930 19 H 0.031 0.969 20 H 0.049 0.951 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.164 0.836 24 H 0.156 0.844 25 H 0.234 0.766 26 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.215 -14.311 -1.666 14.459 hybrid contribution 0.912 0.006 -1.423 1.690 sum 2.126 -14.305 -3.090 14.789 Atomic orbital electron populations 1.69976 1.06054 1.26631 1.50546 1.25019 0.94818 0.99179 0.95379 0.86657 0.79547 0.83214 0.78550 1.20317 1.21360 1.20210 1.21202 0.92969 0.91007 1.50944 0.92608 1.19061 0.93635 0.90066 0.98061 1.20676 0.98086 0.89293 1.01650 1.23189 0.96455 0.98391 0.92397 1.22193 0.98036 0.92328 0.98448 1.21694 0.99628 1.00107 1.00365 1.20072 0.90636 0.89371 0.92337 1.41916 1.45909 1.16366 1.35475 1.73040 1.22075 0.97930 1.22741 1.72800 1.02085 1.09017 1.19627 0.92973 0.96914 0.95059 0.90973 0.91495 0.83627 0.84390 0.76619 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.29 55.43 0.74 -26.94 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.52 -15.04 9.11 -34.45 -0.31 -15.36 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.79 4.84 -27.89 -0.13 0.66 15 10 C -0.06 -1.23 5.57 -27.88 -0.16 -1.38 15 11 C 0.04 0.87 6.26 -82.40 -0.52 0.36 15 12 C -0.08 -1.23 9.81 -39.25 -0.39 -1.61 15 13 C -0.18 -2.45 10.06 -39.00 -0.39 -2.84 15 14 C 0.32 4.76 7.85 -154.77 -1.22 3.55 15 15 N -0.85 -8.57 9.08 31.22 0.28 -8.29 15 16 N -0.31 -5.94 11.54 31.23 0.36 -5.58 15 17 N -0.19 -4.21 11.05 33.61 0.37 -3.84 15 18 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 19 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 15 20 H 0.03 0.92 7.96 -51.93 -0.41 0.51 15 21 H 0.07 1.50 8.14 -51.92 -0.42 1.08 15 22 H 0.07 1.26 7.92 -51.93 -0.41 0.85 15 23 H 0.15 1.74 8.00 -52.49 -0.42 1.32 15 24 H 0.14 1.26 8.06 -52.49 -0.42 0.84 15 25 H 0.40 2.67 8.84 -40.82 -0.36 2.31 15 26 H 0.40 3.73 8.96 -40.82 -0.37 3.36 15 LS Contribution 236.83 15.07 3.57 3.57 Total: -1.00 -34.03 236.83 -5.69 -39.72 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.78 Total: -0.53 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.21 Total: -15.05 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 1.75 Total: -44.64 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -34.03 -5.69 -39.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.857 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds