Wall clock time and date at job start Mon Mar 30 2020 02:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48501 * 109.46784 * 239.99666 * 3 2 1 5 5 H 1.48493 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47132 * 119.99936 * 3 2 1 7 7 C 1.37872 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99570 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00497 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47575 * 179.97438 * 10 9 7 12 12 C 1.38808 * 119.99003 * 125.00316 * 11 10 9 13 13 C 1.38566 * 118.03911 * 179.97438 * 12 11 10 14 14 C 1.39487 * 117.90227 * 359.97438 * 13 12 11 15 15 N 1.39045 * 120.15585 * 180.02562 * 14 13 12 16 16 N 1.32493 * 119.68338 * 0.27894 * 14 13 12 17 17 N 1.28348 * 122.07063 * 359.42152 * 16 14 13 18 18 H 0.96991 * 120.00181 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.47083 * 60.00160 * 9 7 2 20 20 H 1.08998 * 109.47452 * 300.00493 * 9 7 2 21 21 H 1.09008 * 109.46491 * 60.00147 * 10 9 7 22 22 H 1.08998 * 109.47410 * 300.00868 * 10 9 7 23 23 H 1.07997 * 120.98372 * 359.97438 * 12 11 10 24 24 H 1.07994 * 121.05374 * 180.02562 * 13 12 11 25 25 H 0.96999 * 120.00136 * 0.02562 * 15 14 13 26 26 H 0.97005 * 119.99755 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4920 -4.9672 0.0033 12 6 1.7413 -5.9136 -0.9811 13 6 1.0259 -7.0997 -0.9405 14 6 0.0996 -7.2683 0.0887 15 7 -0.6434 -8.4404 0.1745 16 7 -0.0725 -6.3042 0.9810 17 7 0.5976 -5.2103 0.9403 18 1 -0.4850 0.8400 -0.0004 19 1 0.6242 -2.5575 -0.8881 20 1 0.6248 -2.5563 0.8919 21 1 2.8727 -3.6038 0.8910 22 1 2.8715 -3.6047 -0.8889 23 1 2.4712 -5.7310 -1.7558 24 1 1.1813 -7.8696 -1.6817 25 1 -0.5180 -9.1434 -0.4820 26 1 -1.2873 -8.5551 0.8909 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:02 Heat of formation + Delta-G solvation = 17.832212 kcal Electronic energy + Delta-G solvation = -11232.139286 eV Core-core repulsion = 9116.645767 eV Total energy + Delta-G solvation = -2115.493519 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.80666 -36.89998 -35.56353 -34.30165 -32.85113 -30.33655 -27.31261 -25.35898 -24.16732 -22.34980 -18.89815 -18.53716 -18.29333 -16.63402 -16.52823 -16.19753 -15.90580 -14.85094 -14.61777 -14.39702 -13.80583 -13.26932 -12.86093 -12.67095 -12.33267 -12.09308 -11.75217 -11.48660 -11.16106 -10.93461 -10.53480 -10.32609 -9.07569 -8.15221 -6.28020 0.03741 0.35372 1.42755 1.47346 1.54876 2.44292 2.51631 2.78827 3.17547 3.45068 3.83794 3.92909 4.14536 4.31062 4.67185 4.80909 4.82694 5.12656 5.21572 5.40150 5.53402 5.76631 5.89411 6.24735 6.26821 6.83455 6.90138 7.41314 8.06894 8.96892 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.089350 B = 0.007155 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.299505 B = 3912.555719 C = 4079.864724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.038 3.962 10 C -0.045 4.045 11 C 0.018 3.982 12 C -0.079 4.079 13 C -0.166 4.166 14 C 0.317 3.683 15 N -0.826 5.826 16 N -0.354 5.354 17 N -0.249 5.249 18 H 0.262 0.738 19 H -0.018 1.018 20 H -0.012 1.012 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.183 0.817 24 H 0.192 0.808 25 H 0.425 0.575 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -16.342 -4.557 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.000 4.000 10 C -0.084 4.084 11 C -0.134 4.134 12 C -0.107 4.107 13 C -0.199 4.199 14 C 0.072 3.928 15 N -0.374 5.374 16 N -0.204 5.204 17 N -0.089 5.089 18 H 0.071 0.929 19 H 0.001 0.999 20 H 0.006 0.994 21 H 0.087 0.913 22 H 0.112 0.888 23 H 0.200 0.800 24 H 0.209 0.791 25 H 0.258 0.742 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.743 -15.726 -3.199 16.281 hybrid contribution 0.348 0.244 -0.971 1.060 sum 3.091 -15.482 -4.170 16.329 Atomic orbital electron populations 1.70149 1.08158 1.27765 1.51743 1.26086 0.95728 1.03724 0.94715 0.85418 0.78123 0.77594 0.79388 1.18552 1.21213 1.19119 1.21711 0.93880 0.91949 1.50494 0.91143 1.18848 0.94045 0.92613 0.94493 1.20407 0.96878 0.88329 1.02744 1.23042 0.97170 0.98883 0.94285 1.22512 0.98694 0.91825 0.97707 1.22227 0.97287 1.00308 1.00034 1.20438 0.90939 0.89554 0.91872 1.41918 1.44524 1.15119 1.35827 1.72853 1.23455 0.98746 1.25352 1.72631 1.03687 1.10876 1.21692 0.92914 0.99935 0.99352 0.91320 0.88819 0.79972 0.79091 0.74153 0.75974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.02 13.29 21.45 0.28 -59.74 15 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 15 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 15 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 15 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 15 9 C 0.04 2.13 4.84 29.85 0.14 2.27 15 10 C -0.04 -1.92 5.57 29.85 0.17 -1.75 15 11 C 0.02 0.69 6.26 42.70 0.27 0.96 15 12 C -0.08 -2.20 9.81 22.48 0.22 -1.98 15 13 C -0.17 -3.77 10.06 22.65 0.23 -3.54 15 14 C 0.32 8.86 7.85 133.11 1.05 9.90 15 15 N -0.83 -14.21 9.08 -55.13 -0.50 -14.71 15 16 N -0.35 -13.85 11.54 -55.09 -0.64 -14.49 15 17 N -0.25 -11.24 11.05 -47.57 -0.53 -11.76 15 18 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 19 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 15 20 H -0.01 -0.77 7.96 -2.39 -0.02 -0.79 15 21 H 0.07 2.92 8.14 -2.38 -0.02 2.90 15 22 H 0.09 3.43 7.92 -2.39 -0.02 3.41 15 23 H 0.18 3.58 8.00 -2.91 -0.02 3.56 15 24 H 0.19 2.26 8.06 -2.91 -0.02 2.24 15 25 H 0.42 3.81 8.84 -92.71 -0.82 2.99 15 26 H 0.41 6.66 8.96 -92.70 -0.83 5.83 15 Total: -1.00 -78.45 236.83 2.97 -75.48 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -0.45 Total: 3.47 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 2.77 Total: -25.50 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -1.38 Total: -100.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -78.45 2.97 -75.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.309 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds