Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41384 * 128.00929 * 2 1 4 4 N 1.30172 * 106.39467 * 180.26493 * 3 2 1 5 5 O 1.20920 * 111.60631 * 359.76553 * 4 3 2 6 6 C 1.34042 * 111.56713 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.77315 * 179.97438 * 6 5 4 8 8 C 1.50699 * 115.54817 * 245.50014 * 7 6 5 9 9 H 1.08002 * 120.00065 * 219.73714 * 8 7 6 10 10 C 1.37872 * 120.00091 * 39.73263 * 8 7 6 11 11 N 1.31516 * 120.00037 * 7.73981 * 10 8 7 12 12 Si 1.86804 * 120.00221 * 187.74089 * 10 8 7 13 13 H 1.48503 * 109.46974 * 270.00063 * 12 10 8 14 14 H 1.48503 * 109.46926 * 29.99656 * 12 10 8 15 15 H 1.48495 * 109.47332 * 150.00069 * 12 10 8 16 16 C 1.53000 * 117.52350 * 31.20517 * 7 6 5 17 17 C 1.52998 * 60.00238 * 107.47773 * 16 7 6 18 18 H 1.09004 * 109.47291 * 271.10548 * 1 2 3 19 19 H 1.09007 * 109.47237 * 31.09974 * 1 2 3 20 20 H 1.08995 * 109.47486 * 151.09928 * 1 2 3 21 21 H 1.08000 * 126.80173 * 359.97438 * 3 2 1 22 22 H 0.97000 * 119.99779 * 174.86893 * 11 10 8 23 23 H 1.08994 * 117.49677 * 214.97273 * 16 7 6 24 24 H 1.08999 * 117.49201 * 359.97438 * 16 7 6 25 25 H 1.09004 * 117.50138 * 252.51288 * 17 16 7 26 26 H 1.08995 * 117.49708 * 107.48794 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3776 1.1140 0.0000 4 7 3.5878 0.6345 -0.0058 5 8 3.5876 -0.5747 -0.0046 6 6 2.3410 -1.0673 0.0017 7 6 1.9455 -2.5214 0.0044 8 6 1.2249 -3.0013 -1.2290 9 1 0.3980 -3.6901 -1.1378 10 6 1.6210 -2.5609 -2.4740 11 7 2.7176 -1.8459 -2.6004 12 14 0.6002 -2.9797 -3.9814 13 1 1.0737 -4.2633 -4.5588 14 1 -0.8272 -3.1087 -3.5923 15 1 0.7425 -1.9003 -4.9912 16 6 2.8832 -3.5079 0.7034 17 6 1.5430 -3.1416 1.3440 18 1 -0.3634 0.0198 1.0275 19 1 -0.3634 0.8800 -0.5308 20 1 -0.3634 -0.8996 -0.4966 21 1 2.0946 2.1563 -0.0004 22 1 3.0367 -1.5992 -3.4826 23 1 2.9790 -4.5038 0.2710 24 1 3.7867 -3.1051 1.1611 25 1 1.5646 -2.4978 2.2234 26 1 0.7569 -3.8966 1.3330 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259828861.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 77.442430 kcal Electronic energy + Delta-G solvation = -12255.346011 eV Core-core repulsion = 10110.144633 eV Total energy + Delta-G solvation = -2145.201377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.59730 -36.60326 -33.41291 -32.25481 -30.53925 -27.03379 -25.80947 -22.23671 -21.36196 -20.75203 -19.19636 -17.17703 -16.17707 -15.27975 -14.67587 -14.01426 -13.47094 -12.87289 -12.38462 -12.15070 -11.90506 -11.41267 -11.09397 -11.03485 -10.62623 -10.47214 -10.20788 -9.81958 -9.40704 -9.16509 -9.03089 -8.44607 -7.69657 -6.18374 -4.25818 2.83841 3.20613 3.29102 3.31021 3.40229 4.24498 4.33492 5.00137 5.35068 5.38085 5.73678 5.89718 6.14787 6.24545 6.36123 6.43332 6.53108 6.54988 6.74667 6.84176 7.01968 7.11310 7.23179 7.35406 7.70436 8.11187 8.70718 9.34666 9.48913 10.85528 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.017695 C = 0.015362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.137514 B = 1581.945216 C = 1822.285658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.239 4.239 3 C -0.023 4.023 4 N -0.396 5.396 5 O 0.097 5.903 6 C 0.106 3.894 7 C 0.110 3.890 8 C -0.494 4.494 9 H 0.073 0.927 10 C 0.074 3.926 11 N -0.863 5.863 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.269 1.269 15 H -0.285 1.285 16 C -0.195 4.195 17 C -0.189 4.189 18 H 0.050 0.950 19 H 0.050 0.950 20 H 0.080 0.920 21 H 0.170 0.830 22 H 0.267 0.733 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 1.052 3.785 5.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.244 4.244 3 C -0.201 4.201 4 N -0.103 5.103 5 O 0.035 5.965 6 C 0.042 3.958 7 C 0.108 3.892 8 C -0.530 4.530 9 H 0.091 0.909 10 C -0.132 4.132 11 N -0.498 5.498 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.194 1.194 15 H -0.210 1.210 16 C -0.233 4.233 17 C -0.227 4.227 18 H 0.069 0.931 19 H 0.069 0.931 20 H 0.099 0.901 21 H 0.187 0.813 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.231 1.774 3.626 4.612 hybrid contribution -1.163 -0.114 -1.024 1.554 sum -3.394 1.661 2.603 4.588 Atomic orbital electron populations 1.19873 0.88858 1.02582 1.00416 1.20653 0.97780 0.91205 1.14756 1.24533 0.89366 1.00700 1.05510 1.73685 1.22880 0.92426 1.21273 1.84681 1.30033 1.14712 1.67053 1.23604 0.81839 0.96573 0.93780 1.17079 0.98026 0.82181 0.91909 1.20372 1.16804 1.27827 0.88033 0.90909 1.25050 0.94906 0.93973 0.99309 1.69874 1.20465 1.35409 1.24019 0.86498 0.80827 0.78128 0.82201 1.20360 1.19407 1.21036 1.23074 0.92320 1.02118 1.05819 1.22953 0.99246 1.03961 0.96496 0.93120 0.93133 0.90133 0.81297 0.92280 0.89403 0.90968 0.90939 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.31 36.00 0.37 -0.77 15 2 C -0.24 -5.38 6.32 -104.42 -0.66 -6.04 15 3 C -0.02 -0.50 12.16 -17.06 -0.21 -0.71 15 4 N -0.40 -9.55 12.07 30.35 0.37 -9.18 15 5 O 0.10 2.48 11.17 17.17 0.19 2.67 15 6 C 0.11 2.61 4.60 -35.30 -0.16 2.45 15 7 C 0.11 2.65 1.99 -156.81 -0.31 2.34 15 8 C -0.49 -12.67 8.29 -34.44 -0.29 -12.96 15 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 15 10 C 0.07 1.94 5.28 -17.82 -0.09 1.85 15 11 N -0.86 -24.17 11.85 55.43 0.66 -23.51 15 12 Si 0.90 20.29 29.55 -169.99 -5.02 15.27 15 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 16 C -0.20 -4.29 9.94 -26.73 -0.27 -4.55 15 17 C -0.19 -3.85 9.94 -26.73 -0.27 -4.11 15 18 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.08 1.65 7.33 -51.93 -0.38 1.27 15 21 H 0.17 2.96 8.06 -52.49 -0.42 2.54 15 22 H 0.27 7.25 8.32 -40.82 -0.34 6.91 15 23 H 0.09 1.89 8.14 -51.93 -0.42 1.46 15 24 H 0.07 1.54 8.14 -51.93 -0.42 1.11 15 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 LS Contribution 235.17 15.07 3.54 3.54 Total: -1.00 -28.44 235.17 -5.03 -33.48 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -2.89 Total: 0.24 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.88 Total: -22.51 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 1.02 Total: -32.69 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.19 Total: 2.67 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.44 -5.03 -33.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828861.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.918 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds