Wall clock time and date at job start Mon Mar 30 2020 02:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48498 * 109.46840 * 89.99456 * 3 2 1 5 5 H 1.48501 * 109.46899 * 209.99657 * 3 2 1 6 6 H 1.48502 * 109.46961 * 329.99821 * 3 2 1 7 7 C 1.37881 * 119.99240 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00692 * 342.08887 * 7 2 1 9 9 C 1.50708 * 119.99400 * 162.09717 * 7 2 1 10 10 H 1.08996 * 109.49941 * 54.53401 * 9 7 2 11 11 C 1.53137 * 109.49633 * 174.60613 * 9 7 2 12 12 C 1.53323 * 109.57214 * 189.39097 * 11 9 7 13 13 N 1.46258 * 108.72679 * 309.69666 * 12 11 9 14 14 C 1.34695 * 128.85116 * 197.07939 * 13 12 11 15 15 N 1.30832 * 107.07667 * 179.85371 * 14 13 12 16 16 N 1.28910 * 109.73540 * 0.04724 * 15 14 13 17 17 C 1.29833 * 109.48574 * 0.02905 * 16 15 14 18 18 C 1.50812 * 128.52062 * 179.79890 * 17 16 15 19 19 H 0.97003 * 120.00169 * 174.58242 * 1 2 3 20 20 H 1.08994 * 109.45475 * 309.41470 * 11 9 7 21 21 H 1.08991 * 109.45710 * 69.38309 * 11 9 7 22 22 H 1.09001 * 109.59478 * 69.46465 * 12 11 9 23 23 H 1.09000 * 109.59714 * 189.92053 * 12 11 9 24 24 H 1.08006 * 126.45725 * 359.81704 * 14 13 12 25 25 H 1.09007 * 109.70337 * 76.25227 * 18 17 16 26 26 H 1.09004 * 109.76167 * 315.56824 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.5037 -2.1067 0.2886 9 6 3.4567 -1.2260 -0.4007 10 1 4.0177 -0.5158 0.2068 11 6 4.0155 -2.6356 -0.1861 12 6 5.5379 -2.6177 -0.3675 13 7 5.8525 -1.9505 -1.6304 14 6 6.9981 -1.9784 -2.3383 15 7 6.8125 -1.2354 -3.3990 16 7 5.6186 -0.7494 -3.3866 17 6 4.9955 -1.1586 -2.3236 18 6 3.5872 -0.8478 -1.8823 19 1 -0.4850 -0.8363 -0.0793 20 1 3.7741 -2.9722 0.8220 21 1 3.5717 -3.3164 -0.9124 22 1 5.9980 -2.0741 0.4576 23 1 5.9153 -3.6400 -0.3902 24 1 7.9001 -2.5128 -2.0787 25 1 2.8800 -1.4290 -2.4740 26 1 3.3875 0.2162 -2.0095 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259839176.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:42 Heat of formation + Delta-G solvation = 47.946527 kcal Electronic energy + Delta-G solvation = -12068.062753 eV Core-core repulsion = 9953.875089 eV Total energy + Delta-G solvation = -2114.187665 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.18358 -38.42911 -35.47742 -33.85377 -31.83181 -30.19854 -26.96856 -24.95707 -23.39732 -22.47115 -20.30031 -19.73260 -18.06219 -17.24687 -16.08094 -15.96787 -15.41742 -15.20645 -14.73208 -14.42690 -13.99528 -13.23444 -12.68996 -12.52453 -12.29850 -12.06343 -11.76174 -11.56829 -11.37356 -10.98752 -10.93433 -10.48264 -10.11482 -8.73277 -6.39489 0.94733 1.47737 1.51622 1.67331 1.70818 1.88672 2.47098 2.99628 3.45647 3.66202 3.81536 3.94457 4.11356 4.36316 4.48577 4.57158 4.69272 4.88161 4.89981 5.09632 5.15143 5.37481 5.47976 5.94138 6.05069 6.08629 6.57676 7.37009 7.75891 8.63230 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.050649 B = 0.013212 C = 0.011691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.694054 B = 2118.709652 C = 2394.378098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.011 4.011 3 Si 1.073 2.927 4 H -0.268 1.268 5 H -0.251 1.251 6 H -0.290 1.290 7 C -0.598 4.598 8 H 0.032 0.968 9 C 0.017 3.983 10 H 0.034 0.966 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.470 5.470 14 C 0.165 3.835 15 N -0.354 5.354 16 N -0.347 5.347 17 C 0.181 3.819 18 C -0.037 4.037 19 H 0.258 0.742 20 H 0.096 0.904 21 H 0.055 0.945 22 H 0.110 0.890 23 H 0.133 0.867 24 H 0.271 0.729 25 H 0.074 0.926 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.213 -5.780 1.960 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.210 4.210 3 Si 0.896 3.104 4 H -0.194 1.194 5 H -0.175 1.175 6 H -0.217 1.217 7 C -0.635 4.635 8 H 0.051 0.949 9 C -0.002 4.002 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.016 4.016 13 N -0.160 5.160 14 C -0.123 4.123 15 N -0.193 5.193 16 N -0.187 5.187 17 C -0.089 4.089 18 C -0.076 4.076 19 H 0.067 0.933 20 H 0.114 0.886 21 H 0.074 0.926 22 H 0.128 0.872 23 H 0.151 0.849 24 H 0.286 0.714 25 H 0.092 0.908 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.310 -3.482 0.750 13.778 hybrid contribution -0.818 -2.325 0.961 2.645 sum 12.491 -5.806 1.711 13.881 Atomic orbital electron populations 1.70915 1.08513 1.30014 1.47633 1.26947 0.95984 1.05869 0.92245 0.83689 0.75697 0.72673 0.78340 1.19373 1.17535 1.21674 1.22083 0.96327 0.95301 1.49827 0.94947 1.19120 0.95856 0.94993 0.90268 0.94744 1.21807 0.92525 0.97576 1.03428 1.22443 0.97418 0.99868 0.81844 1.46477 1.11434 1.36734 1.21359 1.27121 0.93188 1.01931 0.90084 1.74282 1.10164 1.13743 1.21127 1.73945 1.01716 1.23614 1.19384 1.25203 0.97271 0.95254 0.91164 1.20838 0.85167 1.02021 0.99621 0.93327 0.88607 0.92645 0.87232 0.84923 0.71387 0.90793 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.33 13.69 21.45 0.29 -56.04 15 2 C -0.01 -0.58 5.34 84.66 0.45 -0.13 15 3 Si 1.07 48.48 26.49 68.60 1.82 50.30 15 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.25 -10.43 5.38 99.48 0.53 -9.90 15 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 15 7 C -0.60 -30.94 8.79 25.60 0.22 -30.71 15 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 15 9 C 0.02 0.72 1.66 -11.34 -0.02 0.70 15 10 H 0.03 1.41 6.66 -2.39 -0.02 1.39 15 11 C -0.12 -3.60 5.18 30.75 0.16 -3.44 15 12 C 0.10 2.31 7.02 86.53 0.61 2.91 15 13 N -0.47 -13.94 3.11 -519.36 -1.62 -15.56 15 14 C 0.16 4.39 12.83 180.28 2.31 6.70 15 15 N -0.35 -13.15 12.23 -60.31 -0.74 -13.89 15 16 N -0.35 -14.82 12.21 -50.27 -0.61 -15.43 15 17 C 0.18 7.08 7.75 138.14 1.07 8.15 15 18 C -0.04 -1.55 5.12 30.04 0.15 -1.40 15 19 H 0.26 15.61 8.73 -92.71 -0.81 14.80 15 20 H 0.10 2.78 8.11 -2.39 -0.02 2.76 15 21 H 0.05 1.82 8.12 -2.39 -0.02 1.80 15 22 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.27 3.53 8.06 -2.91 -0.02 3.51 15 25 H 0.07 3.28 8.11 -2.38 -0.02 3.26 15 26 H 0.07 3.32 5.16 -2.38 -0.01 3.31 15 Total: -1.00 -69.83 218.23 5.07 -64.75 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 0.97 Total: 3.07 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.96 Total: -17.21 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -2.67 Total: -100.92 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.82 Total: 50.30 kcal Total: -69.83 5.07 -64.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839176.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.701 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds