Wall clock time and date at job start Mon Mar 30 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34336 * 126.16492 * 2 1 4 4 O 1.34742 * 107.11448 * 179.73902 * 3 2 1 5 5 C 1.33970 * 107.75568 * 0.36007 * 4 3 2 6 6 C 1.50705 * 125.62085 * 179.90026 * 5 4 3 7 7 C 1.50693 * 115.55277 * 124.53373 * 6 5 4 8 8 H 1.08003 * 120.00191 * 89.78152 * 7 6 5 9 9 C 1.37878 * 119.99978 * 269.78298 * 7 6 5 10 10 N 1.31516 * 120.00151 * 186.86012 * 9 7 6 11 11 Si 1.86800 * 119.99997 * 6.86511 * 9 7 6 12 12 H 1.48510 * 109.46761 * 275.13206 * 11 9 7 13 13 H 1.48499 * 109.47288 * 35.12749 * 11 9 7 14 14 H 1.48493 * 109.47311 * 155.13251 * 11 9 7 15 15 C 1.53006 * 117.49669 * 270.20392 * 6 5 4 16 16 C 1.52998 * 117.49743 * 338.85958 * 6 5 4 17 17 N 1.30254 * 108.75970 * 359.63295 * 5 4 3 18 18 H 1.09005 * 109.46979 * 270.03933 * 1 2 3 19 19 H 1.08997 * 109.47482 * 30.04655 * 1 2 3 20 20 H 1.08998 * 109.46543 * 150.04607 * 1 2 3 21 21 H 1.08000 * 126.43893 * 359.94457 * 3 2 1 22 22 H 0.96999 * 120.00214 * 179.97438 * 10 9 7 23 23 H 1.08999 * 117.49796 * 215.00350 * 15 6 5 24 24 H 1.08999 * 117.49541 * 0.02562 * 15 6 5 25 25 H 1.09007 * 117.49927 * 359.97438 * 16 6 5 26 26 H 1.09003 * 117.49783 * 144.99530 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2998 1.0845 0.0000 4 8 3.5734 0.6447 0.0059 5 6 3.5431 -0.6946 0.0013 6 6 4.7481 -1.5998 0.0032 7 6 4.8004 -2.6101 1.1200 8 1 4.3554 -3.5852 0.9875 9 6 5.4164 -2.2896 2.3112 10 7 5.5819 -3.2112 3.2348 11 14 6.0157 -0.5464 2.6134 12 1 7.3709 -0.3806 2.0289 13 1 5.0809 0.4159 1.9766 14 1 6.0720 -0.2885 4.0747 15 6 5.3212 -2.0158 -1.3532 16 6 6.0751 -1.0104 -0.4791 17 7 2.3006 -1.0856 0.0008 18 1 -0.3633 0.0007 1.0277 19 1 -0.3634 0.8895 -0.5145 20 1 -0.3632 -0.8904 -0.5131 21 1 1.9769 2.1151 -0.0008 22 1 6.0156 -2.9858 4.0726 23 1 5.7360 -3.0202 -1.4375 24 1 4.8270 -1.6343 -2.2467 25 1 6.0765 0.0319 -0.7981 26 1 6.9860 -1.3534 0.0116 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855382.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:05 Heat of formation + Delta-G solvation = 20.371224 kcal Electronic energy + Delta-G solvation = -11965.400186 eV Core-core repulsion = 9817.724016 eV Total energy + Delta-G solvation = -2147.676171 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.11450 -38.51058 -35.95966 -34.38714 -32.21528 -28.40550 -27.86159 -24.40431 -23.50045 -22.06710 -20.96227 -18.91511 -17.70864 -17.58277 -16.70737 -16.03639 -15.43964 -14.87908 -14.64037 -14.10525 -13.84785 -13.25653 -13.01883 -12.95456 -12.44605 -12.18420 -12.07434 -11.76037 -11.30358 -11.22547 -10.89040 -10.71036 -9.43025 -8.42684 -6.52791 0.65331 1.27198 1.32305 1.45858 1.84302 1.94374 2.27353 2.90393 3.02468 3.35307 4.00040 4.12192 4.19361 4.30357 4.48726 4.73349 4.78916 4.85552 4.91626 5.01717 5.11622 5.29938 5.34845 5.46942 5.58575 6.16132 6.55980 7.06115 7.17319 8.71720 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.014968 C = 0.014102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.796070 B = 1870.182105 C = 1985.114137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.048 4.048 3 C -0.104 4.104 4 O -0.220 6.220 5 C 0.235 3.765 6 C 0.037 3.963 7 C -0.481 4.481 8 H 0.040 0.960 9 C 0.033 3.967 10 N -0.931 5.931 11 Si 0.931 3.069 12 H -0.241 1.241 13 H -0.255 1.255 14 H -0.292 1.292 15 C -0.134 4.134 16 C -0.174 4.174 17 N -0.522 5.522 18 H 0.076 0.924 19 H 0.107 0.893 20 H 0.066 0.934 21 H 0.256 0.744 22 H 0.272 0.728 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 11.090 -7.305 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 C -0.174 4.174 4 O -0.107 6.107 5 C 0.029 3.971 6 C 0.035 3.965 7 C -0.518 4.518 8 H 0.059 0.941 9 C -0.167 4.167 10 N -0.568 5.568 11 Si 0.755 3.245 12 H -0.165 1.165 13 H -0.179 1.179 14 H -0.218 1.218 15 C -0.172 4.172 16 C -0.212 4.212 17 N -0.252 5.252 18 H 0.095 0.905 19 H 0.126 0.874 20 H 0.085 0.915 21 H 0.271 0.729 22 H 0.081 0.919 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.283 10.433 -7.124 13.340 hybrid contribution 0.273 0.886 0.753 1.195 sum -4.011 11.319 -6.370 13.594 Atomic orbital electron populations 1.20167 0.84087 1.04272 1.03334 1.22656 1.00020 0.88206 1.05812 1.25514 0.79778 1.02274 1.09800 1.84493 1.31857 1.24384 1.69990 1.26628 0.95416 0.78345 0.96736 1.17334 0.86153 0.95052 0.97982 1.20124 1.36432 0.97596 0.97638 0.94128 1.25817 0.94816 1.01065 0.95001 1.69997 1.43369 1.35527 1.07935 0.85967 0.81110 0.80516 0.76942 1.16487 1.17919 1.21845 1.23020 1.01829 1.00238 0.92080 1.23181 0.95204 0.98908 1.03880 1.70317 1.01535 1.32660 1.20712 0.90484 0.87450 0.91497 0.72862 0.91875 0.87660 0.88057 0.87729 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.43 71.24 0.74 -0.83 15 2 C -0.05 -1.77 7.11 41.26 0.29 -1.47 15 3 C -0.10 -3.47 12.08 66.93 0.81 -2.66 15 4 O -0.22 -9.23 9.81 -3.65 -0.04 -9.27 15 5 C 0.24 11.21 6.68 88.34 0.59 11.80 15 6 C 0.04 1.79 1.38 -53.67 -0.07 1.72 15 7 C -0.48 -28.19 9.40 25.60 0.24 -27.95 15 8 H 0.04 2.68 8.06 -2.91 -0.02 2.65 15 9 C 0.03 1.95 5.46 84.65 0.46 2.42 15 10 N -0.93 -57.86 13.96 21.45 0.30 -57.56 15 11 Si 0.93 44.65 25.22 68.60 1.73 46.38 15 12 H -0.24 -10.41 6.93 99.48 0.69 -9.72 15 13 H -0.26 -12.12 5.82 99.48 0.58 -11.54 15 14 H -0.29 -13.93 7.11 99.48 0.71 -13.22 15 15 C -0.13 -5.30 9.94 30.62 0.30 -4.99 15 16 C -0.17 -7.02 7.60 30.62 0.23 -6.79 15 17 N -0.52 -24.98 11.29 -291.97 -3.30 -28.27 15 18 H 0.08 1.85 8.14 -2.38 -0.02 1.83 15 19 H 0.11 1.85 8.14 -2.39 -0.02 1.83 15 20 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.26 5.17 8.06 -2.91 -0.02 5.15 15 22 H 0.27 15.72 8.31 -92.71 -0.77 14.95 15 23 H 0.11 4.05 8.14 -2.39 -0.02 4.03 15 24 H 0.10 3.50 8.14 -2.39 -0.02 3.48 15 25 H 0.10 3.71 8.09 -2.38 -0.02 3.69 15 26 H 0.10 4.01 7.14 -2.39 -0.02 3.99 15 Total: -1.00 -71.91 230.58 3.32 -68.59 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.03 Total: 8.89 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.60 Total: -28.76 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -3.00 Total: -85.83 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.04 Total: -9.27 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.73 Total: 46.38 kcal Total: -71.91 3.32 -68.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855382.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.959 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds