Wall clock time and date at job start Mon Mar 30 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08992 * 109.47287 * 300.00214 * 9 7 2 11 11 C 1.53134 * 109.46521 * 180.02562 * 9 7 2 12 12 C 1.53388 * 109.44504 * 170.07975 * 11 9 7 13 13 C 1.50707 * 108.40819 * 49.70486 * 12 11 9 14 14 O 1.34046 * 128.33069 * 163.40508 * 13 12 11 15 15 C 1.34224 * 107.58064 * 180.17104 * 14 13 12 16 16 N 1.30518 * 108.83149 * 359.96301 * 15 14 13 17 17 C 1.33880 * 108.56027 * 359.97438 * 16 15 14 18 18 C 1.50803 * 128.12523 * 180.02562 * 17 16 15 19 19 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47665 * 290.07978 * 11 9 7 21 21 H 1.09000 * 109.47490 * 50.08730 * 11 9 7 22 22 H 1.08997 * 109.68555 * 289.96656 * 12 11 9 23 23 H 1.09001 * 109.66286 * 169.42671 * 12 11 9 24 24 H 1.07995 * 125.58514 * 180.02562 * 15 14 13 25 25 H 1.09003 * 109.67219 * 43.70563 * 18 17 16 26 26 H 1.08991 * 109.70652 * 283.18602 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8745 -0.6799 -0.8910 11 6 4.0220 -2.6377 -0.0023 12 6 5.5354 -2.6440 -0.2521 13 6 6.1778 -1.6608 0.6924 14 8 7.4698 -1.5593 1.0345 15 6 7.5801 -0.5434 1.9048 16 7 6.3980 -0.0260 2.1004 17 6 5.5099 -0.6999 1.3593 18 6 4.0231 -0.4716 1.2515 19 1 -0.4849 0.8401 -0.0004 20 1 3.8109 -3.0986 0.9626 21 1 3.5212 -3.1995 -0.7907 22 1 5.7388 -2.3504 -1.2818 23 1 5.9331 -3.6422 -0.0691 24 1 8.4970 -0.2084 2.3668 25 1 3.8209 0.5962 1.1678 26 1 3.5249 -0.8714 2.1346 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856633.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:45 Heat of formation + Delta-G solvation = -9.945552 kcal Electronic energy + Delta-G solvation = -12038.668003 eV Core-core repulsion = 9889.677199 eV Total energy + Delta-G solvation = -2148.990805 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.36557 -38.54310 -35.68706 -34.59571 -31.76957 -30.45962 -26.95102 -24.67072 -23.19601 -22.75100 -20.34398 -18.91725 -18.09590 -17.64638 -16.69240 -16.12916 -15.29961 -15.01439 -14.87134 -14.34485 -13.83171 -13.51368 -13.28512 -12.80562 -12.48019 -12.08491 -11.93998 -11.71765 -11.47691 -11.14340 -11.02362 -10.72622 -9.49171 -8.33385 -6.36072 0.55156 1.27764 1.31732 1.39973 1.72689 1.83468 2.27568 2.99791 3.34636 3.87619 3.95677 4.09487 4.21548 4.41811 4.59579 4.70455 4.74549 4.98026 4.98411 5.08045 5.17660 5.42627 5.48230 5.63107 5.65959 6.28873 6.71569 6.80399 7.29890 8.83102 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.050823 B = 0.013700 C = 0.011467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.800449 B = 2043.264779 C = 2441.229724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.277 1.277 5 H -0.257 1.257 6 H -0.292 1.292 7 C -0.513 4.513 8 H 0.049 0.951 9 C 0.013 3.987 10 H 0.028 0.972 11 C -0.094 4.094 12 C -0.024 4.024 13 C -0.046 4.046 14 O -0.199 6.199 15 C 0.172 3.828 16 N -0.528 5.528 17 C -0.043 4.043 18 C -0.040 4.040 19 H 0.266 0.734 20 H 0.058 0.942 21 H 0.085 0.915 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.302 0.698 25 H 0.043 0.957 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.741 -3.141 0.823 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.181 1.181 6 H -0.219 1.219 7 C -0.551 4.551 8 H 0.068 0.932 9 C -0.006 4.006 10 H 0.046 0.954 11 C -0.132 4.132 12 C -0.061 4.061 13 C -0.099 4.099 14 O -0.086 6.086 15 C -0.053 4.053 16 N -0.256 5.256 17 C -0.162 4.162 18 C -0.078 4.078 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.104 0.896 22 H 0.119 0.881 23 H 0.131 0.869 24 H 0.317 0.683 25 H 0.061 0.939 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.488 -2.557 1.206 15.744 hybrid contribution -0.106 0.696 -0.060 0.707 sum 15.382 -1.860 1.146 15.537 Atomic orbital electron populations 1.70007 1.07788 1.27932 1.52559 1.25708 0.95255 1.02205 0.94415 0.86044 0.78930 0.80224 0.78398 1.20319 1.18110 1.21900 1.21322 0.90785 0.93364 1.49628 0.93226 1.19228 0.94070 0.94755 0.92535 0.95387 1.21488 0.92614 0.96565 1.02504 1.20362 0.93558 0.96245 0.95965 1.23629 0.80827 1.02255 1.03224 1.84284 1.27535 1.46558 1.50218 1.29249 0.99522 0.85259 0.91292 1.70105 1.01401 1.29679 1.24410 1.21783 0.97772 0.97024 0.99641 1.20471 0.86572 0.99594 1.01147 0.92436 0.92310 0.89605 0.88083 0.86929 0.68348 0.93868 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.96 21.45 0.30 -58.32 15 2 C 0.02 1.29 5.45 84.65 0.46 1.75 15 3 Si 0.94 46.69 24.28 68.60 1.67 48.35 15 4 H -0.28 -13.72 6.97 99.48 0.69 -13.02 15 5 H -0.26 -12.27 6.51 99.48 0.65 -11.62 15 6 H -0.29 -14.25 7.11 99.48 0.71 -13.55 15 7 C -0.51 -28.61 9.11 25.60 0.23 -28.38 15 8 H 0.05 2.98 7.99 -2.91 -0.02 2.95 15 9 C 0.01 0.61 1.66 -11.37 -0.02 0.60 15 10 H 0.03 1.31 7.17 -2.39 -0.02 1.29 15 11 C -0.09 -3.38 5.15 30.77 0.16 -3.22 15 12 C -0.02 -0.69 6.30 29.98 0.19 -0.50 15 13 C -0.05 -1.54 7.24 24.87 0.18 -1.36 15 14 O -0.20 -5.70 10.77 0.73 0.01 -5.69 15 15 C 0.17 4.44 13.23 130.44 1.73 6.17 15 16 N -0.53 -19.46 11.29 -303.48 -3.43 -22.89 15 17 C -0.04 -1.75 6.98 41.46 0.29 -1.46 15 18 C -0.04 -1.84 4.88 30.01 0.15 -1.69 15 19 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 20 H 0.06 2.12 8.12 -2.39 -0.02 2.10 15 21 H 0.09 2.91 8.11 -2.39 -0.02 2.89 15 22 H 0.10 2.56 8.14 -2.39 -0.02 2.54 15 23 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.30 3.53 8.06 -2.91 -0.02 3.50 15 25 H 0.04 2.12 3.67 -2.39 -0.01 2.11 15 26 H 0.07 3.13 8.11 -2.39 -0.02 3.11 15 Total: -1.00 -70.11 216.71 3.02 -67.09 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.11 Total: -0.45 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 3.37 Total: -28.09 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.13 Total: -81.21 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: 0.01 Total: -5.69 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.67 Total: 48.35 kcal Total: -70.11 3.02 -67.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856633.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.145 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds