Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99871 * 2 1 4 4 H 1.48501 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47052 * 299.99853 * 3 2 1 6 6 H 1.48503 * 109.46870 * 60.00046 * 3 2 1 7 7 C 1.37885 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99849 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.57691 * 59.82907 * 9 7 2 11 11 C 1.53146 * 109.52727 * 179.97438 * 9 7 2 12 12 C 1.53233 * 109.65532 * 189.37046 * 11 9 7 13 13 N 1.46659 * 108.80733 * 309.15490 * 12 11 9 14 14 N 1.28311 * 127.83530 * 197.49571 * 13 12 11 15 15 N 1.28854 * 110.13285 * 179.85992 * 14 13 12 16 16 C 1.34053 * 108.95071 * 0.05078 * 15 14 13 17 17 C 1.34479 * 106.21908 * 0.02562 * 16 15 14 18 18 C 1.50597 * 128.61550 * 179.88556 * 17 16 15 19 19 H 0.96993 * 120.00532 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.43680 * 309.42667 * 11 9 7 21 21 H 1.08995 * 109.44179 * 69.31234 * 11 9 7 22 22 H 1.08999 * 109.58235 * 68.95750 * 12 11 9 23 23 H 1.09003 * 109.57363 * 189.35585 * 12 11 9 24 24 H 1.08006 * 126.89073 * 179.97438 * 16 15 14 25 25 H 1.09000 * 109.73230 * 75.91047 * 18 17 16 26 26 H 1.08997 * 109.73619 * 315.22617 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6219 -2.5576 -0.8876 11 6 2.2453 -3.6641 0.0005 12 6 1.4968 -4.9804 -0.2344 13 7 0.3753 -5.0612 0.7072 14 7 -0.2933 -6.1022 1.0474 15 7 -1.2042 -5.7846 1.9017 16 6 -1.1376 -4.4670 2.1396 17 6 -0.1321 -3.9985 1.3794 18 6 0.3741 -2.5854 1.2573 19 1 -0.4850 0.8399 -0.0004 20 1 2.9773 -3.5163 -0.7935 21 1 2.7569 -3.7044 0.9621 22 1 1.1185 -5.0082 -1.2563 23 1 2.1730 -5.8194 -0.0702 24 1 -1.7660 -3.8961 2.8072 25 1 0.9654 -2.3290 2.1363 26 1 -0.4680 -1.8993 1.1667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865367.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 81.986880 kcal Electronic energy + Delta-G solvation = -12002.695780 eV Core-core repulsion = 9889.984215 eV Total energy + Delta-G solvation = -2112.711564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.68423 -36.61428 -33.52277 -31.84300 -30.35841 -28.36860 -25.28428 -23.40031 -21.89554 -21.33755 -18.57798 -16.64577 -16.48976 -15.80746 -14.69400 -13.74413 -13.51685 -13.26889 -13.17186 -12.76206 -11.91723 -11.48896 -11.11510 -11.02185 -10.76772 -10.59058 -10.34792 -10.03135 -9.55052 -9.36192 -9.12442 -8.64304 -8.25477 -6.20376 -4.27494 2.31616 3.02792 3.19117 3.20245 3.28769 3.31188 4.27997 4.96141 5.10522 5.22297 5.32111 5.51403 5.77320 5.88792 6.09721 6.25242 6.32016 6.59435 6.68447 6.81406 7.01326 7.28837 7.45555 7.59193 7.80327 8.13559 8.75820 9.14648 9.39534 10.87210 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.066951 B = 0.010904 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.116080 B = 2567.223898 C = 2871.498642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.044 3.956 10 H 0.033 0.967 11 C -0.129 4.129 12 C 0.116 3.884 13 N -0.290 5.290 14 N -0.114 5.114 15 N -0.285 5.285 16 C -0.078 4.078 17 C 0.017 3.983 18 C -0.046 4.046 19 H 0.264 0.736 20 H 0.084 0.916 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.183 0.817 25 H 0.071 0.929 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -3.636 0.551 4.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.025 3.975 10 H 0.052 0.948 11 C -0.167 4.167 12 C -0.005 4.005 13 N -0.086 5.086 14 N -0.093 5.093 15 N -0.152 5.152 16 C -0.234 4.234 17 C -0.115 4.115 18 C -0.085 4.085 19 H 0.074 0.926 20 H 0.103 0.897 21 H 0.082 0.918 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.200 0.800 25 H 0.089 0.911 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.318 -5.081 0.332 5.595 hybrid contribution 0.571 2.057 0.065 2.136 sum 2.888 -3.025 0.397 4.201 Atomic orbital electron populations 1.69866 1.05965 1.26945 1.49773 1.24993 0.94894 0.99364 0.94550 0.86483 0.80076 0.83423 0.77735 1.19717 1.20942 1.20865 1.21082 0.93032 0.89857 1.51843 0.92091 1.18819 0.92463 0.92209 0.93962 0.94849 1.22127 0.99458 0.92517 1.02589 1.22324 0.85223 1.01635 0.91315 1.47398 1.24745 1.05794 1.30616 1.77990 1.05015 1.12342 1.13977 1.75084 1.15263 1.13688 1.11140 1.23011 1.02184 0.92102 1.06090 1.23027 0.97500 0.94417 0.96550 1.20704 1.02178 0.85116 1.00539 0.92638 0.89721 0.91828 0.89184 0.89158 0.80019 0.91095 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 11.52 55.43 0.64 -22.76 15 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 15 3 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.52 -12.81 8.52 -34.44 -0.29 -13.11 15 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 9 C 0.04 0.98 2.13 -91.44 -0.19 0.79 15 10 H 0.03 0.82 8.12 -51.93 -0.42 0.40 15 11 C -0.13 -2.28 5.16 -26.53 -0.14 -2.42 15 12 C 0.12 1.87 7.22 -3.83 -0.03 1.85 15 13 N -0.29 -5.71 3.76 -57.00 -0.21 -5.93 15 14 N -0.11 -2.39 13.23 60.35 0.80 -1.59 15 15 N -0.29 -6.02 12.42 30.12 0.37 -5.64 15 16 C -0.08 -1.53 12.02 -17.91 -0.22 -1.74 15 17 C 0.02 0.35 6.61 -82.31 -0.54 -0.19 15 18 C -0.05 -0.99 5.18 -27.68 -0.14 -1.14 15 19 H 0.26 6.66 8.31 -40.82 -0.34 6.32 15 20 H 0.08 1.37 8.12 -51.93 -0.42 0.95 15 21 H 0.06 1.12 8.12 -51.93 -0.42 0.70 15 22 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.09 1.22 8.14 -51.93 -0.42 0.79 15 24 H 0.18 3.00 8.06 -52.48 -0.42 2.57 15 25 H 0.07 1.53 8.10 -51.93 -0.42 1.11 15 26 H 0.11 2.68 6.56 -51.93 -0.34 2.34 15 LS Contribution 223.37 15.07 3.37 3.37 Total: -1.00 -27.79 223.37 -4.54 -32.34 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -2.84 Total: -0.07 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.65 Total: -14.43 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 1.60 Total: -35.92 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.79 -4.54 -32.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865367.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.325 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds