Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99871 * 2 1 4 4 H 1.48501 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47052 * 299.99853 * 3 2 1 6 6 H 1.48503 * 109.46870 * 60.00046 * 3 2 1 7 7 C 1.37885 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99849 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.57691 * 59.82907 * 9 7 2 11 11 C 1.53146 * 109.52727 * 179.97438 * 9 7 2 12 12 C 1.53233 * 109.65532 * 189.37046 * 11 9 7 13 13 N 1.46659 * 108.80733 * 309.15490 * 12 11 9 14 14 N 1.28311 * 127.83530 * 197.49571 * 13 12 11 15 15 N 1.28854 * 110.13285 * 179.85992 * 14 13 12 16 16 C 1.34053 * 108.95071 * 0.05078 * 15 14 13 17 17 C 1.34479 * 106.21908 * 0.02562 * 16 15 14 18 18 C 1.50597 * 128.61550 * 179.88556 * 17 16 15 19 19 H 0.96993 * 120.00532 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.43680 * 309.42667 * 11 9 7 21 21 H 1.08995 * 109.44179 * 69.31234 * 11 9 7 22 22 H 1.08999 * 109.58235 * 68.95750 * 12 11 9 23 23 H 1.09003 * 109.57363 * 189.35585 * 12 11 9 24 24 H 1.08006 * 126.89073 * 179.97438 * 16 15 14 25 25 H 1.09000 * 109.73230 * 75.91047 * 18 17 16 26 26 H 1.08997 * 109.73619 * 315.22617 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6219 -2.5576 -0.8876 11 6 2.2453 -3.6641 0.0005 12 6 1.4968 -4.9804 -0.2344 13 7 0.3753 -5.0612 0.7072 14 7 -0.2933 -6.1022 1.0474 15 7 -1.2042 -5.7846 1.9017 16 6 -1.1376 -4.4670 2.1396 17 6 -0.1321 -3.9985 1.3794 18 6 0.3741 -2.5854 1.2573 19 1 -0.4850 0.8399 -0.0004 20 1 2.9773 -3.5163 -0.7935 21 1 2.7569 -3.7044 0.9621 22 1 1.1185 -5.0082 -1.2563 23 1 2.1730 -5.8194 -0.0702 24 1 -1.7660 -3.8961 2.8072 25 1 0.9654 -2.3290 2.1363 26 1 -0.4680 -1.8993 1.1667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865367.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 64.811283 kcal Electronic energy + Delta-G solvation = -12003.440569 eV Core-core repulsion = 9889.984215 eV Total energy + Delta-G solvation = -2113.456354 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.25266 -38.21586 -35.21509 -33.59814 -31.94155 -29.98231 -27.10786 -24.94771 -23.45292 -23.00895 -20.17142 -18.46861 -18.02232 -17.39872 -16.49960 -15.32350 -15.05291 -14.86555 -14.80561 -14.32562 -13.58923 -13.07024 -12.82180 -12.69967 -12.56201 -12.27162 -11.93737 -11.70089 -11.21930 -10.94723 -10.84736 -10.54452 -9.90108 -8.12116 -6.24674 0.72777 1.44770 1.49226 1.57550 1.58828 1.61818 2.44894 3.17934 3.51502 3.77214 3.96983 4.15471 4.25665 4.35645 4.62864 4.73449 4.77323 4.98033 5.10562 5.27006 5.33569 5.60527 5.70586 5.86646 5.96236 6.27142 6.85827 7.45273 7.55920 8.94568 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.066951 B = 0.010904 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.116080 B = 2567.223898 C = 2871.498642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.064 0.936 9 C 0.039 3.961 10 H 0.004 0.996 11 C -0.118 4.118 12 C 0.111 3.889 13 N -0.286 5.286 14 N -0.121 5.121 15 N -0.304 5.304 16 C -0.073 4.073 17 C 0.000 4.000 18 C -0.031 4.031 19 H 0.262 0.738 20 H 0.103 0.897 21 H 0.066 0.934 22 H 0.104 0.896 23 H 0.126 0.874 24 H 0.208 0.792 25 H 0.068 0.932 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -4.057 0.541 5.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.020 3.980 10 H 0.022 0.978 11 C -0.157 4.157 12 C -0.008 4.008 13 N -0.082 5.082 14 N -0.100 5.100 15 N -0.170 5.170 16 C -0.229 4.229 17 C -0.132 4.132 18 C -0.071 4.071 19 H 0.072 0.928 20 H 0.121 0.879 21 H 0.085 0.915 22 H 0.122 0.878 23 H 0.144 0.856 24 H 0.225 0.775 25 H 0.086 0.914 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.421 -5.520 0.314 6.501 hybrid contribution 0.236 2.176 0.043 2.189 sum 3.656 -3.344 0.357 4.968 Atomic orbital electron populations 1.69990 1.07183 1.27422 1.50917 1.25701 0.95553 1.02349 0.94578 0.85575 0.79274 0.79898 0.77304 1.18888 1.21202 1.20936 1.21458 0.93398 0.91016 1.50953 0.91761 1.18781 0.93009 0.93381 0.92814 0.97808 1.21981 0.98677 0.91450 1.03548 1.22615 0.84844 1.01972 0.91353 1.47691 1.24933 1.05160 1.30373 1.77935 1.05251 1.12639 1.14129 1.75075 1.15847 1.14292 1.11793 1.23485 1.01878 0.91815 1.05764 1.22904 0.98451 0.94106 0.97773 1.20367 1.01062 0.85496 1.00179 0.92838 0.87873 0.91494 0.87825 0.85572 0.77533 0.91401 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.84 11.52 21.45 0.25 -48.59 15 2 C 0.02 0.90 5.31 84.66 0.45 1.34 15 3 Si 0.95 40.17 29.54 68.60 2.03 42.20 15 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.53 -25.80 8.52 25.60 0.22 -25.58 15 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.04 1.71 2.13 -11.33 -0.02 1.69 15 10 H 0.00 0.19 8.12 -2.38 -0.02 0.17 15 11 C -0.12 -3.94 5.16 30.72 0.16 -3.78 15 12 C 0.11 3.30 7.22 86.43 0.62 3.92 15 13 N -0.29 -10.71 3.76 -334.24 -1.26 -11.96 15 14 N -0.12 -4.82 13.23 37.02 0.49 -4.33 15 15 N -0.30 -12.41 12.42 -58.61 -0.73 -13.14 15 16 C -0.07 -2.78 12.02 83.49 1.00 -1.78 15 17 C 0.00 0.01 6.61 41.08 0.27 0.28 15 18 C -0.03 -1.36 5.18 29.98 0.16 -1.20 15 19 H 0.26 13.43 8.31 -92.71 -0.77 12.66 15 20 H 0.10 3.06 8.12 -2.38 -0.02 3.04 15 21 H 0.07 2.19 8.12 -2.39 -0.02 2.17 15 22 H 0.10 2.83 8.14 -2.39 -0.02 2.81 15 23 H 0.13 2.89 8.14 -2.39 -0.02 2.87 15 24 H 0.21 6.52 8.06 -2.91 -0.02 6.49 15 25 H 0.07 2.91 8.10 -2.39 -0.02 2.89 15 26 H 0.09 4.22 6.56 -2.39 -0.02 4.21 15 Total: -1.00 -57.99 223.37 4.81 -53.19 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.17 Total: 7.75 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 2.86 Total: -25.11 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.25 Total: -78.03 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -57.99 4.81 -53.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865367.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.998 kcal (2) G-P(sol) polarization free energy of solvation -57.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds