Wall clock time and date at job start Mon Mar 30 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48511 * 109.46880 * 239.99994 * 3 2 1 5 5 H 1.48499 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47602 * 119.99998 * 3 2 1 7 7 C 1.39729 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.41469 * 120.00539 * 359.97438 * 7 2 1 10 10 C 1.47604 * 128.73866 * 0.05049 * 9 7 2 11 11 N 1.29847 * 105.36736 * 179.97438 * 10 9 7 12 12 O 1.20566 * 112.94017 * 359.69159 * 11 10 9 13 13 C 1.33768 * 113.30023 * 0.51519 * 12 11 10 14 14 C 1.50703 * 127.06232 * 179.77722 * 13 12 11 15 15 C 1.53000 * 109.46912 * 269.68605 * 14 13 12 16 16 C 1.53003 * 117.49371 * 243.62054 * 15 14 13 17 17 C 1.53001 * 117.49608 * 175.00128 * 15 14 13 18 18 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 19 19 H 1.08000 * 127.31303 * 359.95263 * 10 9 7 20 20 H 1.09002 * 109.47152 * 149.68377 * 14 13 12 21 21 H 1.09001 * 109.46980 * 29.68477 * 14 13 12 22 22 H 1.08995 * 115.55630 * 29.32739 * 15 14 13 23 23 H 1.08998 * 117.50656 * 0.02562 * 16 15 14 24 24 H 1.09001 * 117.49674 * 145.02590 * 16 15 14 25 25 H 1.09003 * 117.49710 * 214.97494 * 17 15 14 26 26 H 1.09000 * 117.50278 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 3.0978 1.6963 -1.2126 5 1 1.2790 2.7464 -0.0006 6 1 3.0978 1.6965 1.2124 7 6 2.0086 -1.2101 0.0005 8 1 3.0887 -1.2102 0.0010 9 6 1.3013 -2.4353 0.0016 10 6 -0.1576 -2.6596 0.0013 11 7 -0.3074 -3.9494 0.0022 12 8 0.7412 -4.5443 -0.0031 13 6 1.8077 -3.7369 0.0025 14 6 3.2577 -4.1474 0.0031 15 6 3.7480 -4.2854 1.4459 16 6 4.8527 -3.3342 1.9105 17 6 5.1688 -4.8104 1.6619 18 1 -0.4850 0.8401 0.0004 19 1 -0.9352 -1.9101 0.0009 20 1 3.8499 -3.3903 -0.5110 21 1 3.3650 -5.1030 -0.5101 22 1 2.9898 -4.5709 2.1749 23 1 5.2299 -2.6098 1.1887 24 1 4.8212 -2.9937 2.9455 25 1 5.3453 -5.4410 2.5333 26 1 5.7541 -5.0579 0.7763 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879135.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:56 Heat of formation + Delta-G solvation = 43.659266 kcal Electronic energy + Delta-G solvation = -11739.196511 eV Core-core repulsion = 9592.530186 eV Total energy + Delta-G solvation = -2146.666325 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.64925 -38.31733 -36.04377 -33.21579 -33.02133 -29.11281 -27.28253 -23.39337 -23.05005 -21.87665 -20.95342 -19.17050 -17.73462 -17.40204 -16.68302 -16.12474 -15.19508 -14.99139 -14.41396 -13.98964 -13.32700 -13.01102 -12.77324 -12.59672 -12.37449 -12.23150 -11.89536 -11.48242 -11.31084 -11.11368 -10.59233 -10.37882 -9.66713 -8.65262 -6.37713 1.09601 1.40808 1.48092 1.53391 2.01553 2.21788 2.92527 3.22136 3.27876 3.98319 4.13033 4.24596 4.29268 4.44909 4.70506 4.83511 4.88146 5.04478 5.11646 5.25801 5.32369 5.38655 5.47942 5.63945 5.73022 6.30438 6.71810 6.87421 8.16763 8.38595 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.014805 C = 0.010286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.858008 B = 1890.843936 C = 2721.571696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.025 3.975 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.451 4.451 8 H 0.089 0.911 9 C -0.014 4.014 10 C -0.066 4.066 11 N -0.415 5.415 12 O 0.065 5.935 13 C -0.245 4.245 14 C 0.043 3.957 15 C -0.162 4.162 16 C -0.182 4.182 17 C -0.156 4.156 18 H 0.288 0.712 19 H 0.186 0.814 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 -1.132 1.615 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.482 4.482 8 H 0.107 0.893 9 C -0.019 4.019 10 C -0.245 4.245 11 N -0.121 5.121 12 O -0.004 6.004 13 C -0.307 4.307 14 C 0.005 3.995 15 C -0.181 4.181 16 C -0.219 4.219 17 C -0.193 4.193 18 H 0.098 0.902 19 H 0.202 0.798 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.124 0.876 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.853 -1.759 1.613 8.208 hybrid contribution 0.049 1.475 0.054 1.477 sum 7.902 -0.284 1.667 8.081 Atomic orbital electron populations 1.69698 1.09040 1.30517 1.38564 1.26847 0.95730 1.04865 0.91282 0.85027 0.78356 0.74850 0.80152 1.18141 1.19586 1.18219 1.18985 0.94587 0.88853 1.45749 0.89302 1.20281 0.90707 0.93797 0.97094 1.26711 0.98807 0.91207 1.07763 1.73034 1.07336 1.10495 1.21213 1.84011 1.10125 1.35455 1.70763 1.24413 0.91034 0.88724 1.26577 1.19037 0.84437 1.01148 0.94881 1.22228 0.92099 1.06506 0.97267 1.23036 1.02947 0.93720 1.02237 1.23070 0.96304 0.95884 1.04018 0.90171 0.79753 0.90356 0.90059 0.90225 0.88798 0.89026 0.87592 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.43 10.66 21.80 0.23 -44.20 15 2 C 0.02 1.23 5.49 85.18 0.47 1.69 15 3 Si 1.00 37.61 29.56 68.60 2.03 39.63 15 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 6 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 7 C -0.45 -23.85 9.33 23.43 0.22 -23.63 15 8 H 0.09 4.38 7.71 -2.91 -0.02 4.35 15 9 C -0.01 -0.77 6.24 -19.67 -0.12 -0.89 15 10 C -0.07 -3.77 11.25 87.46 0.98 -2.79 15 11 N -0.42 -22.82 11.96 -53.09 -0.63 -23.45 15 12 O 0.07 3.41 11.06 74.61 0.83 4.24 15 13 C -0.25 -12.16 6.87 26.03 0.18 -11.98 15 14 C 0.04 1.64 5.96 29.85 0.18 1.82 15 15 C -0.16 -5.51 5.72 -10.79 -0.06 -5.57 15 16 C -0.18 -5.39 10.18 30.60 0.31 -5.07 15 17 C -0.16 -3.86 10.25 30.60 0.31 -3.55 15 18 H 0.29 13.66 8.30 -92.71 -0.77 12.89 15 19 H 0.19 10.61 6.30 -2.91 -0.02 10.59 15 20 H 0.08 2.91 7.74 -2.39 -0.02 2.89 15 21 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 22 H 0.08 3.00 8.07 -2.39 -0.02 2.98 15 23 H 0.09 2.75 8.03 -2.39 -0.02 2.73 15 24 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.11 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.11 2.32 8.14 -2.39 -0.02 2.30 15 Total: -1.00 -60.05 234.57 6.09 -53.95 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.18 Total: 19.79 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 2.47 Total: -49.97 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -0.40 Total: -67.65 kcal Atomic # 8 Polarization: 3.41 SS G_CDS: 0.83 Total: 4.24 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.63 kcal Total: -60.05 6.09 -53.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879135.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.614 kcal (2) G-P(sol) polarization free energy of solvation -60.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds