Wall clock time and date at job start Mon Mar 30 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38132 * 119.99029 * 99.72315 * 10 9 7 12 12 C 1.38846 * 119.98025 * 179.79079 * 11 10 9 13 13 N 1.39936 * 120.01710 * 180.23935 * 12 11 10 14 14 C 1.38885 * 119.95873 * 0.48678 * 12 11 10 15 15 C 1.38085 * 119.98336 * 359.74274 * 14 12 11 16 16 C 1.38682 * 119.98902 * 280.00014 * 10 9 7 17 17 O 1.36003 * 119.98327 * 0.02562 * 16 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.08000 * 120.00768 * 0.02562 * 11 10 9 22 22 H 0.97005 * 119.99558 * 180.25148 * 13 12 11 23 23 H 0.96997 * 120.00121 * 0.24562 * 13 12 11 24 24 H 1.07998 * 120.00372 * 179.72823 * 14 12 11 25 25 H 1.07997 * 119.98912 * 179.97438 * 15 14 12 26 26 H 0.96698 * 113.99510 * 89.99910 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5254 -4.3017 1.1759 12 6 3.4244 -5.3598 1.1739 13 7 3.7201 -6.0293 2.3666 14 6 4.0338 -5.7500 -0.0115 15 6 3.7413 -5.0889 -1.1880 16 6 2.8393 -4.0348 -1.1860 17 8 2.5528 -3.3833 -2.3449 18 1 -0.4849 0.8400 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6247 -2.5562 -0.8920 21 1 2.0541 -3.9950 2.0979 22 1 4.3510 -6.7662 2.3656 23 1 3.2944 -5.7566 3.1944 24 1 4.7365 -6.5701 -0.0131 25 1 4.2154 -5.3919 -2.1098 26 1 3.1315 -2.6300 -2.5259 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925684.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:52 Heat of formation + Delta-G solvation = -55.191899 kcal Electronic energy + Delta-G solvation = -11564.605925 eV Core-core repulsion = 9413.653091 eV Total energy + Delta-G solvation = -2150.952833 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.59433 -37.77551 -35.58615 -34.31587 -32.80705 -29.43944 -28.11225 -25.27819 -23.17729 -21.85488 -19.03273 -18.38784 -17.78439 -17.41793 -16.43364 -16.03248 -15.54697 -14.77214 -14.42810 -14.09289 -13.65743 -13.51942 -13.08277 -12.82752 -12.53331 -12.40976 -11.87095 -11.68382 -10.93637 -10.88410 -10.58304 -9.54216 -8.24647 -8.11682 -6.31547 0.61309 0.71423 1.41234 1.44382 1.52536 2.41379 2.96254 3.10345 3.14205 3.77442 4.12410 4.21655 4.54132 4.78814 4.93012 5.20811 5.29730 5.39223 5.45785 5.56311 5.76277 5.91907 6.09346 6.19301 6.65339 6.80874 7.12977 7.14609 7.36860 8.92350 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044932 B = 0.010466 C = 0.009613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.014890 B = 2674.604640 C = 2911.993404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.064 3.936 10 C -0.050 4.050 11 C -0.206 4.206 12 C 0.210 3.790 13 N -0.867 5.867 14 C -0.199 4.199 15 C -0.095 4.095 16 C 0.018 3.982 17 O -0.508 6.508 18 H 0.265 0.735 19 H -0.004 1.004 20 H 0.000 1.000 21 H 0.112 0.888 22 H 0.409 0.591 23 H 0.403 0.597 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 -9.717 2.017 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.051 4.051 11 C -0.228 4.228 12 C 0.105 3.895 13 N -0.408 5.408 14 C -0.221 4.221 15 C -0.114 4.114 16 C -0.028 4.028 17 O -0.318 6.318 18 H 0.073 0.927 19 H 0.014 0.986 20 H 0.018 0.982 21 H 0.130 0.870 22 H 0.239 0.761 23 H 0.232 0.768 24 H 0.172 0.828 25 H 0.164 0.836 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.201 -10.025 1.939 13.745 hybrid contribution 0.184 1.314 0.359 1.374 sum 9.385 -8.711 2.298 13.010 Atomic orbital electron populations 1.70099 1.07919 1.27958 1.51304 1.25972 0.95723 1.03239 0.94534 0.85438 0.78183 0.77779 0.79258 1.18770 1.20848 1.19367 1.21246 0.92963 0.90870 1.51002 0.92486 1.17933 0.92888 0.91367 0.95153 1.20570 0.96538 0.94930 0.93057 1.20419 1.04734 1.00126 0.97565 1.17796 0.92603 0.90859 0.88209 1.42345 1.52392 1.39467 1.06627 1.20621 1.06041 1.05029 0.90406 1.21311 0.95696 0.95141 0.99278 1.18342 1.01244 0.97829 0.85340 1.84727 1.61289 1.47802 1.38000 0.92652 0.98562 0.98181 0.86985 0.76057 0.76818 0.82815 0.83648 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 15 2 C 0.00 0.19 5.46 84.66 0.46 0.65 15 3 Si 0.97 44.44 29.54 68.60 2.03 46.46 15 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 15 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 7 C -0.52 -30.34 9.09 25.60 0.23 -30.11 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 15 9 C 0.06 3.61 4.76 29.10 0.14 3.74 15 10 C -0.05 -2.34 5.09 -19.78 -0.10 -2.44 15 11 C -0.21 -8.27 9.51 22.39 0.21 -8.06 15 12 C 0.21 6.57 6.76 38.15 0.26 6.83 15 13 N -0.87 -18.68 9.10 -51.26 -0.47 -19.14 15 14 C -0.20 -5.70 9.89 22.39 0.22 -5.48 15 15 C -0.10 -3.15 9.98 22.35 0.22 -2.93 15 16 C 0.02 0.78 6.67 22.49 0.15 0.93 15 17 O -0.51 -21.91 12.73 -93.58 -1.19 -23.10 15 18 H 0.26 15.35 8.31 -92.71 -0.77 14.58 15 19 H 0.00 -0.24 8.01 -2.39 -0.02 -0.26 15 20 H 0.00 0.00 7.85 -2.39 -0.02 -0.02 15 21 H 0.11 4.47 8.04 -2.91 -0.02 4.44 15 22 H 0.41 6.20 8.84 -92.70 -0.82 5.38 15 23 H 0.40 7.77 8.84 -92.71 -0.82 6.96 15 24 H 0.15 3.14 8.06 -2.91 -0.02 3.12 15 25 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 26 H 0.39 14.33 9.06 -74.06 -0.67 13.66 15 Total: -1.00 -70.38 235.98 1.36 -69.02 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -1.09 Total: 21.02 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 1.80 Total: -36.86 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -0.18 Total: -76.55 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.19 Total: -23.10 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.38 1.36 -69.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925684.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.830 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds