Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99501 * 2 1 4 4 H 1.48502 * 109.46987 * 239.99816 * 3 2 1 5 5 H 1.48492 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46944 * 120.00235 * 3 2 1 7 7 C 1.37877 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47345 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47140 * 305.00267 * 10 9 7 12 12 N 1.46906 * 109.46907 * 65.00037 * 10 9 7 13 13 C 1.50699 * 109.47265 * 185.00015 * 10 9 7 14 14 C 1.38619 * 120.44624 * 124.72087 * 13 10 9 15 15 C 1.38573 * 118.39633 * 179.76218 * 14 13 10 16 16 N 1.32344 * 119.10779 * 0.51328 * 15 14 13 17 17 C 1.31779 * 120.81894 * 359.75085 * 16 15 14 18 18 N 1.31812 * 121.75189 * 359.97345 * 17 16 15 19 19 H 0.97001 * 120.00376 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46826 * 59.99844 * 9 7 2 21 21 H 1.08994 * 109.46955 * 300.00411 * 9 7 2 22 22 H 1.00902 * 111.00068 * 296.04454 * 12 10 9 23 23 H 1.00897 * 110.99706 * 59.99868 * 12 10 9 24 24 H 1.07996 * 120.80085 * 0.02562 * 14 13 10 25 25 H 1.08002 * 120.44718 * 180.26161 * 15 14 13 26 26 H 1.08001 * 119.12457 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 1 2.9290 -3.5547 -0.8441 12 7 3.0095 -3.6544 1.2529 13 6 1.4961 -4.9636 -0.1257 14 6 1.7999 -5.8551 -1.1427 15 6 1.0876 -7.0416 -1.2138 16 7 0.1402 -7.2781 -0.3205 17 6 -0.1250 -6.4046 0.6298 18 7 0.5354 -5.2684 0.7316 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6249 -2.5571 0.8896 22 1 3.5713 -2.8196 1.3291 23 1 2.3978 -3.7525 2.0493 24 1 2.5760 -5.6322 -1.8599 25 1 1.2999 -7.7617 -1.9901 26 1 -0.9043 -6.6254 1.3443 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941494.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = 12.156873 kcal Electronic energy + Delta-G solvation = -11513.909863 eV Core-core repulsion = 9398.170243 eV Total energy + Delta-G solvation = -2115.739620 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.89155 -37.57193 -34.79327 -33.90331 -32.62029 -29.95473 -27.08291 -25.31887 -24.58802 -21.87798 -19.01292 -18.20559 -17.56045 -16.64058 -16.43809 -16.22771 -15.64082 -14.95728 -14.55293 -14.23046 -14.15872 -13.55266 -12.82097 -12.64561 -12.31895 -12.00232 -11.74949 -11.57417 -11.27978 -10.62943 -10.52390 -10.15216 -9.46692 -8.22515 -6.35690 0.02916 0.19716 1.41057 1.43483 1.51209 2.38742 2.88957 3.11034 3.20552 3.33715 3.59208 4.07096 4.17002 4.23291 4.47914 4.67483 4.80013 4.93221 5.31344 5.49258 5.55666 5.74450 6.11454 6.13293 6.26614 6.63700 6.81066 7.20833 7.34901 8.89060 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.067980 B = 0.008648 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.786391 B = 3237.021781 C = 3359.778772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.017 3.983 10 C 0.144 3.856 11 H 0.095 0.905 12 N -0.823 5.823 13 C 0.177 3.823 14 C -0.222 4.222 15 C 0.147 3.853 16 N -0.541 5.541 17 C 0.279 3.721 18 N -0.541 5.541 19 H 0.262 0.738 20 H -0.021 1.021 21 H -0.004 1.004 22 H 0.350 0.650 23 H 0.336 0.664 24 H 0.171 0.829 25 H 0.209 0.791 26 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -10.136 -1.802 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.090 0.910 9 C -0.022 4.022 10 C 0.032 3.968 11 H 0.113 0.887 12 N -0.352 5.352 13 C 0.031 3.969 14 C -0.244 4.244 15 C -0.018 4.018 16 N -0.256 5.256 17 C -0.008 4.008 18 N -0.256 5.256 19 H 0.071 0.929 20 H -0.003 1.003 21 H 0.014 0.986 22 H 0.164 0.836 23 H 0.147 0.853 24 H 0.189 0.811 25 H 0.225 0.775 26 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.897 -10.884 -1.428 11.649 hybrid contribution -0.099 2.142 -0.300 2.165 sum 3.798 -8.743 -1.728 9.687 Atomic orbital electron populations 1.70129 1.08128 1.27840 1.51303 1.25997 0.95603 1.03525 0.94544 0.85455 0.78112 0.77819 0.79369 1.18964 1.21531 1.18852 1.21535 0.93684 0.91438 1.50994 0.90993 1.19543 0.94419 0.93328 0.94897 1.20391 0.93490 0.88283 0.94667 0.88669 1.59195 1.27250 1.45532 1.03222 1.21977 0.90021 0.95264 0.89628 1.23068 1.04033 0.96226 1.01063 1.23838 0.87920 0.94885 0.95182 1.68448 1.18047 1.33826 1.05258 1.25420 0.96349 0.84624 0.94430 1.68195 1.08045 1.20548 1.28814 0.92883 1.00308 0.98610 0.83612 0.85273 0.81129 0.77470 0.76908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 15 2 C 0.00 0.08 5.46 84.65 0.46 0.54 15 3 Si 0.97 43.09 29.54 68.60 2.03 45.11 15 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 15 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 7 C -0.54 -29.11 8.55 25.60 0.22 -28.89 15 8 H 0.07 3.59 7.14 -2.91 -0.02 3.57 15 9 C 0.02 0.90 4.45 29.85 0.13 1.03 15 10 C 0.14 5.86 3.10 44.17 0.14 6.00 15 11 H 0.10 3.64 7.94 -2.39 -0.02 3.62 15 12 N -0.82 -30.97 9.18 -171.80 -1.58 -32.55 15 13 C 0.18 6.58 5.76 42.58 0.25 6.82 15 14 C -0.22 -6.37 9.80 22.44 0.22 -6.15 15 15 C 0.15 3.67 11.30 84.70 0.96 4.62 15 16 N -0.54 -15.80 10.44 -200.05 -2.09 -17.89 15 17 C 0.28 8.86 12.29 180.88 2.22 11.09 15 18 N -0.54 -20.73 10.11 -188.07 -1.90 -22.63 15 19 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 20 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 15 21 H 0.00 -0.26 8.11 -2.39 -0.02 -0.28 15 22 H 0.35 12.95 7.90 -89.69 -0.71 12.24 15 23 H 0.34 13.12 8.97 -89.70 -0.80 12.31 15 24 H 0.17 3.83 8.01 -2.91 -0.02 3.80 15 25 H 0.21 3.12 8.06 -2.91 -0.02 3.10 15 26 H 0.21 5.30 8.06 -2.91 -0.02 5.28 15 Total: -1.00 -66.94 235.22 1.03 -65.91 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.31 Total: 23.54 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 4.60 Total: -4.93 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.28 Total: -129.62 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.94 1.03 -65.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941494.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.064 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds