Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48495 * 109.47245 * 269.99653 * 3 2 1 5 5 H 1.48497 * 109.47243 * 29.99682 * 3 2 1 6 6 H 1.48503 * 109.46979 * 149.99761 * 3 2 1 7 7 C 1.37876 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99543 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47375 * 54.99914 * 10 9 7 12 12 N 1.46898 * 109.47092 * 295.00082 * 10 9 7 13 13 C 1.50699 * 109.47122 * 174.99795 * 10 9 7 14 14 C 1.38627 * 120.44867 * 125.00030 * 13 10 9 15 15 C 1.38575 * 118.40111 * 179.97438 * 14 13 10 16 16 N 1.32343 * 119.10428 * 359.97438 * 15 14 13 17 17 C 1.31780 * 120.82339 * 359.97438 * 16 15 14 18 18 N 1.31818 * 121.74950 * 0.02562 * 17 16 15 19 19 H 0.96998 * 120.00330 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47373 * 60.00054 * 9 7 2 21 21 H 1.08997 * 109.47147 * 299.99780 * 9 7 2 22 22 H 1.00905 * 110.99870 * 299.99653 * 12 10 9 23 23 H 1.00898 * 111.00329 * 63.95267 * 12 10 9 24 24 H 1.08005 * 120.79591 * 0.25150 * 14 13 10 25 25 H 1.07999 * 120.44747 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.12693 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 1 3.5872 -3.1754 -0.8411 12 7 3.6324 -3.2936 1.2559 13 6 5.5234 -2.6383 -0.1223 14 6 6.3045 -3.2961 0.8152 15 6 7.6813 -3.2710 0.6604 16 7 8.2015 -2.6246 -0.3707 17 6 7.4275 -2.0111 -1.2432 18 7 6.1144 -2.0138 -1.1280 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8751 -0.6805 -0.8888 22 1 4.0229 -2.8124 2.0522 23 1 2.6286 -3.3627 1.3318 24 1 5.8506 -3.8194 1.6439 25 1 8.3212 -3.7727 1.3711 26 1 7.8812 -1.4916 -2.0742 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259941498.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = 41.337667 kcal Electronic energy + Delta-G solvation = -11577.669034 eV Core-core repulsion = 9463.194787 eV Total energy + Delta-G solvation = -2114.474246 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.72618 -36.17376 -33.13478 -32.54804 -31.08087 -28.72911 -25.59142 -24.00590 -22.61400 -20.23320 -17.49756 -17.19658 -16.27814 -15.20468 -14.89878 -14.29819 -14.21923 -13.63602 -13.21954 -13.07032 -12.33937 -12.01668 -11.40556 -10.71763 -10.63516 -10.58839 -10.05832 -9.91034 -9.36329 -9.26571 -8.90561 -8.64822 -8.07549 -6.15489 -4.15488 1.20908 1.34202 3.25887 3.33125 3.37222 4.06123 4.27737 4.36895 4.37636 4.80035 5.16668 5.27813 5.35539 5.58012 5.78979 5.99798 6.14345 6.35955 6.66031 7.05051 7.11921 7.28642 7.62789 7.73133 8.01855 8.36489 8.37863 8.85798 9.46645 10.96970 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.051331 B = 0.010418 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.345936 B = 2687.059840 C = 3032.706637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.032 4.032 10 C 0.144 3.856 11 H 0.100 0.900 12 N -0.840 5.840 13 C 0.194 3.806 14 C -0.214 4.214 15 C 0.134 3.866 16 N -0.537 5.537 17 C 0.286 3.714 18 N -0.514 5.514 19 H 0.264 0.736 20 H 0.013 0.987 21 H 0.030 0.970 22 H 0.331 0.669 23 H 0.360 0.640 24 H 0.156 0.844 25 H 0.162 0.838 26 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -4.592 1.935 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.072 4.072 10 C 0.031 3.969 11 H 0.118 0.882 12 N -0.370 5.370 13 C 0.048 3.952 14 C -0.236 4.236 15 C -0.031 4.031 16 N -0.252 5.252 17 C -0.002 4.002 18 N -0.228 5.228 19 H 0.074 0.926 20 H 0.031 0.969 21 H 0.049 0.951 22 H 0.142 0.858 23 H 0.175 0.825 24 H 0.174 0.826 25 H 0.179 0.821 26 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 12.568 -4.648 0.886 13.429 hybrid contribution -0.451 1.489 0.862 1.779 sum 12.116 -3.158 1.748 12.643 Atomic orbital electron populations 1.69901 1.06242 1.27092 1.50348 1.24964 0.94682 0.99151 0.94189 0.86776 0.80107 0.83610 0.78743 1.20049 1.21374 1.19373 1.21003 0.88810 0.94630 1.52002 0.90673 1.20219 0.97647 0.91795 0.97500 1.20212 0.85538 0.97136 0.93981 0.88215 1.59147 1.18301 1.56252 1.03305 1.22113 0.98089 0.87190 0.87839 1.22850 0.95201 1.02650 1.02921 1.23158 0.93274 0.92835 0.93825 1.68331 1.41789 1.10482 1.04597 1.24888 0.86034 0.93086 0.96207 1.68195 1.12543 1.18601 1.23506 0.92570 0.96923 0.95144 0.85762 0.82473 0.82629 0.82076 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.96 55.43 0.77 -26.12 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 15 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 15 7 C -0.53 -14.23 9.10 -34.44 -0.31 -14.54 15 8 H 0.08 2.13 7.39 -52.49 -0.39 1.74 15 9 C -0.03 -0.75 3.62 -27.88 -0.10 -0.85 15 10 C 0.14 2.79 3.25 -68.87 -0.22 2.57 15 11 H 0.10 2.04 8.14 -51.93 -0.42 1.62 15 12 N -0.84 -14.19 8.01 -5.66 -0.05 -14.24 15 13 C 0.19 3.47 6.19 -82.24 -0.51 2.96 15 14 C -0.21 -3.15 9.27 -39.31 -0.36 -3.52 15 15 C 0.13 1.79 11.30 -17.21 -0.19 1.60 15 16 N -0.54 -8.04 10.44 -14.58 -0.15 -8.19 15 17 C 0.29 4.43 12.29 -92.15 -1.13 3.29 15 18 N -0.51 -9.38 9.94 -10.80 -0.11 -9.49 15 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 20 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 15 21 H 0.03 0.75 7.27 -51.93 -0.38 0.37 15 22 H 0.33 5.21 8.33 -39.29 -0.33 4.88 15 23 H 0.36 6.45 7.90 -39.29 -0.31 6.14 15 24 H 0.16 2.01 6.78 -52.48 -0.36 1.66 15 25 H 0.16 1.54 8.06 -52.49 -0.42 1.11 15 26 H 0.19 2.28 8.06 -52.49 -0.42 1.85 15 LS Contribution 228.50 15.07 3.44 3.44 Total: -1.00 -30.50 228.50 -6.26 -36.76 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -2.57 Total: 7.30 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.94 Total: -6.53 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.47 Total: -58.05 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.50 -6.26 -36.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941498.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.099 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds