Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48495 * 109.47245 * 269.99653 * 3 2 1 5 5 H 1.48497 * 109.47243 * 29.99682 * 3 2 1 6 6 H 1.48503 * 109.46979 * 149.99761 * 3 2 1 7 7 C 1.37876 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99543 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47375 * 54.99914 * 10 9 7 12 12 N 1.46898 * 109.47092 * 295.00082 * 10 9 7 13 13 C 1.50699 * 109.47122 * 174.99795 * 10 9 7 14 14 C 1.38627 * 120.44867 * 125.00030 * 13 10 9 15 15 C 1.38575 * 118.40111 * 179.97438 * 14 13 10 16 16 N 1.32343 * 119.10428 * 359.97438 * 15 14 13 17 17 C 1.31780 * 120.82339 * 359.97438 * 16 15 14 18 18 N 1.31818 * 121.74950 * 0.02562 * 17 16 15 19 19 H 0.96998 * 120.00330 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47373 * 60.00054 * 9 7 2 21 21 H 1.08997 * 109.47147 * 299.99780 * 9 7 2 22 22 H 1.00905 * 110.99870 * 299.99653 * 12 10 9 23 23 H 1.00898 * 111.00329 * 63.95267 * 12 10 9 24 24 H 1.08005 * 120.79591 * 0.25150 * 14 13 10 25 25 H 1.07999 * 120.44747 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.12693 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 1 3.5872 -3.1754 -0.8411 12 7 3.6324 -3.2936 1.2559 13 6 5.5234 -2.6383 -0.1223 14 6 6.3045 -3.2961 0.8152 15 6 7.6813 -3.2710 0.6604 16 7 8.2015 -2.6246 -0.3707 17 6 7.4275 -2.0111 -1.2432 18 7 6.1144 -2.0138 -1.1280 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8751 -0.6805 -0.8888 22 1 4.0229 -2.8124 2.0522 23 1 2.6286 -3.3627 1.3318 24 1 5.8506 -3.8194 1.6439 25 1 8.3212 -3.7727 1.3711 26 1 7.8812 -1.4916 -2.0742 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941498.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = 19.256769 kcal Electronic energy + Delta-G solvation = -11578.626533 eV Core-core repulsion = 9463.194787 eV Total energy + Delta-G solvation = -2115.431746 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.92768 -37.70853 -34.77523 -34.17918 -32.39144 -30.53172 -27.14765 -25.18010 -24.25631 -21.85523 -19.33944 -18.40561 -17.81279 -16.62474 -16.31132 -15.91769 -15.56847 -15.12365 -14.96730 -14.36178 -14.13529 -13.76024 -13.14505 -12.57822 -12.40052 -11.87973 -11.75853 -11.45897 -11.42870 -10.82808 -10.46893 -10.14846 -9.57559 -8.34112 -6.37541 0.03287 0.16555 1.29825 1.31925 1.41616 2.29946 2.87275 2.98402 3.04019 3.34186 3.63741 3.97955 4.14892 4.29861 4.49889 4.63288 4.76424 4.86276 5.14716 5.28133 5.48894 5.59303 6.09314 6.16210 6.25756 6.60697 6.69186 7.19135 7.27699 8.81306 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.051331 B = 0.010418 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.345936 B = 2687.059840 C = 3032.706637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.050 0.950 9 C -0.023 4.023 10 C 0.153 3.847 11 H 0.081 0.919 12 N -0.823 5.823 13 C 0.168 3.832 14 C -0.208 4.208 15 C 0.144 3.856 16 N -0.541 5.541 17 C 0.281 3.719 18 N -0.548 5.548 19 H 0.267 0.733 20 H 0.012 0.988 21 H 0.017 0.983 22 H 0.341 0.659 23 H 0.353 0.647 24 H 0.174 0.826 25 H 0.206 0.794 26 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.270 -4.656 2.726 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.562 4.562 8 H 0.068 0.932 9 C -0.063 4.063 10 C 0.040 3.960 11 H 0.099 0.901 12 N -0.353 5.353 13 C 0.022 3.978 14 C -0.229 4.229 15 C -0.021 4.021 16 N -0.255 5.255 17 C -0.007 4.007 18 N -0.263 5.263 19 H 0.076 0.924 20 H 0.030 0.970 21 H 0.036 0.964 22 H 0.154 0.846 23 H 0.168 0.832 24 H 0.191 0.809 25 H 0.223 0.777 26 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 14.914 -4.721 1.683 15.734 hybrid contribution -1.138 1.414 0.619 1.917 sum 13.776 -3.307 2.302 14.353 Atomic orbital electron populations 1.70024 1.07846 1.28064 1.52210 1.25783 0.95408 1.02757 0.94247 0.85799 0.79115 0.79593 0.78869 1.19768 1.20711 1.18431 1.21290 0.90852 0.93592 1.50509 0.93179 1.20083 0.94986 0.94630 0.96577 1.19896 0.87355 0.94355 0.94431 0.90099 1.59113 1.17783 1.55543 1.02819 1.21865 0.97086 0.89351 0.89461 1.23011 0.95719 1.01829 1.02360 1.23874 0.93189 0.91463 0.93591 1.68450 1.41658 1.10491 1.04950 1.25422 0.85218 0.93028 0.97039 1.68133 1.14067 1.19777 1.24291 0.92428 0.97014 0.96444 0.84636 0.83212 0.80859 0.77702 0.76662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.96 21.45 0.30 -57.10 15 2 C 0.02 0.92 5.47 84.65 0.46 1.39 15 3 Si 0.94 44.82 27.47 68.60 1.88 46.70 15 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 15 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 6 H -0.26 -11.90 6.54 99.48 0.65 -11.25 15 7 C -0.52 -28.78 9.10 25.60 0.23 -28.55 15 8 H 0.05 2.94 7.39 -2.91 -0.02 2.91 15 9 C -0.02 -1.08 3.62 29.85 0.11 -0.97 15 10 C 0.15 5.89 3.25 44.17 0.14 6.03 15 11 H 0.08 3.38 8.14 -2.39 -0.02 3.37 15 12 N -0.82 -27.07 8.01 -171.81 -1.38 -28.45 15 13 C 0.17 5.76 6.19 42.58 0.26 6.03 15 14 C -0.21 -5.50 9.27 22.44 0.21 -5.29 15 15 C 0.14 3.29 11.30 84.70 0.96 4.24 15 16 N -0.54 -14.45 10.44 -200.06 -2.09 -16.54 15 17 C 0.28 8.06 12.29 180.88 2.22 10.29 15 18 N -0.55 -19.31 9.94 -188.07 -1.87 -21.18 15 19 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 20 H 0.01 0.54 7.20 -2.39 -0.02 0.52 15 21 H 0.02 0.85 7.27 -2.39 -0.02 0.83 15 22 H 0.34 10.14 8.33 -89.69 -0.75 9.40 15 23 H 0.35 12.66 7.90 -89.70 -0.71 11.95 15 24 H 0.17 3.88 6.78 -2.91 -0.02 3.86 15 25 H 0.21 2.78 8.06 -2.91 -0.02 2.76 15 26 H 0.22 4.68 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -65.41 228.50 1.14 -64.27 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.30 Total: 19.13 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 4.60 Total: -6.84 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -5.04 Total: -123.27 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -65.41 1.14 -64.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941498.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.528 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds