Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21451 * 120.00172 * 2 1 4 4 C 1.41520 * 119.99854 * 180.02562 * 2 1 3 5 5 C 1.39278 * 125.85469 * 359.96867 * 4 2 1 6 6 C 1.38105 * 107.81763 * 180.02562 * 5 4 2 7 7 C 1.40339 * 107.59515 * 0.02562 * 6 5 4 8 8 C 1.39538 * 126.03036 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00053 * 196.14889 * 8 7 6 10 10 C 1.40635 * 119.99983 * 16.14624 * 8 7 6 11 11 N 1.30466 * 119.99708 * 9.41683 * 10 8 7 12 12 Si 1.86795 * 119.99737 * 189.41889 * 10 8 7 13 13 H 1.48503 * 109.47223 * 85.80591 * 12 10 8 14 14 H 1.48504 * 109.47166 * 205.80730 * 12 10 8 15 15 H 1.48497 * 109.47355 * 325.80429 * 12 10 8 16 16 N 1.37554 * 107.93230 * 359.97438 * 7 6 5 17 17 C 1.46502 * 125.81774 * 179.97438 * 16 7 6 18 18 H 1.09008 * 109.46991 * 240.00054 * 1 2 3 19 19 H 1.09002 * 109.47049 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47842 * 119.99992 * 1 2 3 21 21 H 1.07997 * 126.08885 * 0.05112 * 5 4 2 22 22 H 1.07991 * 126.19919 * 179.73913 * 6 5 4 23 23 H 0.96998 * 119.99593 * 179.97438 * 11 10 8 24 24 H 1.08996 * 109.47296 * 270.01484 * 17 16 7 25 25 H 1.09002 * 109.47128 * 30.01985 * 17 16 7 26 26 H 1.09004 * 109.47167 * 150.01993 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0518 0.0000 4 6 2.2145 -1.2256 -0.0005 5 6 1.6448 -2.4965 -0.0005 6 6 2.6717 -3.4200 -0.0006 7 6 3.8816 -2.7090 0.0000 8 6 5.1610 -3.2660 0.0006 9 1 6.0146 -2.6579 0.2611 10 6 5.3388 -4.6194 -0.3380 11 7 4.3432 -5.3055 -0.8280 12 14 7.0005 -5.4346 -0.0858 13 1 7.0997 -5.9354 1.3087 14 1 7.1429 -6.5710 -1.0312 15 1 8.0799 -4.4456 -0.3346 16 7 3.5837 -1.3661 -0.0003 17 6 4.5578 -0.2718 0.0006 18 1 -0.3633 -0.5139 0.8901 19 1 -0.3633 1.0277 0.0005 20 1 -0.3634 -0.5138 -0.8899 21 1 0.5882 -2.7200 -0.0008 22 1 2.5632 -4.4944 0.0034 23 1 4.4659 -6.2388 -1.0619 24 1 4.7987 -0.0006 1.0285 25 1 5.4645 -0.5920 -0.5127 26 1 4.1349 0.5915 -0.5132 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963447.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -10.205687 kcal Electronic energy + Delta-G solvation = -11767.481051 eV Core-core repulsion = 9618.478966 eV Total energy + Delta-G solvation = -2149.002085 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57718 -37.23910 -33.76988 -31.69716 -29.80414 -28.31971 -25.28288 -24.84826 -20.85650 -19.43447 -17.64750 -16.90182 -15.63274 -14.93391 -14.37279 -13.86169 -13.47967 -13.27284 -12.42558 -12.18125 -11.82047 -11.63639 -11.51383 -11.36811 -11.33294 -10.89110 -10.56471 -10.52747 -9.92143 -9.42025 -8.50714 -7.37143 -6.98058 -6.89644 -4.43330 2.32958 2.93900 2.98729 3.01367 3.77171 3.95101 4.41130 4.58838 5.18102 5.52249 5.83218 6.02049 6.06098 6.26588 6.27888 6.50169 6.56708 6.86605 6.92515 6.97567 7.49657 7.62986 7.89483 8.05198 8.45943 8.66887 8.76694 9.05154 9.14513 10.04535 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.067869 B = 0.010616 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.463259 B = 2636.789886 C = 3005.728342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.396 3.604 3 O -0.546 6.546 4 C -0.210 4.210 5 C -0.095 4.095 6 C -0.264 4.264 7 C 0.264 3.736 8 C -0.452 4.452 9 H 0.079 0.921 10 C 0.082 3.918 11 N -0.778 5.778 12 Si 0.924 3.076 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.262 1.262 16 N -0.467 5.467 17 C 0.095 3.905 18 H 0.078 0.922 19 H 0.066 0.934 20 H 0.078 0.922 21 H 0.115 0.885 22 H 0.144 0.856 23 H 0.284 0.716 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 0.237 0.733 1.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.290 3.710 3 O -0.436 6.436 4 C -0.311 4.311 5 C -0.121 4.121 6 C -0.285 4.285 7 C 0.148 3.852 8 C -0.487 4.487 9 H 0.097 0.903 10 C -0.140 4.140 11 N -0.403 5.403 12 Si 0.748 3.252 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.186 1.186 16 N -0.151 5.151 17 C -0.048 4.048 18 H 0.096 0.904 19 H 0.085 0.915 20 H 0.097 0.903 21 H 0.133 0.867 22 H 0.161 0.839 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.510 0.866 0.639 1.191 hybrid contribution 0.622 -0.570 0.083 0.847 sum 0.112 0.296 0.722 0.788 Atomic orbital electron populations 1.21993 0.95883 1.02668 1.03250 1.19811 0.90403 0.87026 0.73778 1.90405 1.71618 1.35062 1.46552 1.18901 0.83633 0.95039 1.33553 1.21150 0.97366 0.92007 1.01554 1.21429 0.90208 0.98875 1.18022 1.18415 0.94930 0.79918 0.91943 1.18696 0.92292 0.95191 1.42518 0.90258 1.25868 0.99132 0.96907 0.92074 1.69649 1.32455 1.09890 1.28328 0.86060 0.80948 0.78946 0.79232 1.19023 1.20005 1.18586 1.43869 1.04242 1.05192 1.61802 1.21631 0.92075 0.90036 1.01028 0.90359 0.91516 0.90327 0.86718 0.83885 0.90459 0.93754 0.91677 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.53 36.00 0.34 -2.70 15 2 C 0.40 8.92 7.06 -33.06 -0.23 8.69 15 3 O -0.55 -13.50 15.20 5.41 0.08 -13.42 15 4 C -0.21 -5.17 6.71 -83.62 -0.56 -5.73 15 5 C -0.09 -2.24 10.21 -39.24 -0.40 -2.64 15 6 C -0.26 -6.88 9.61 -38.84 -0.37 -7.26 15 7 C 0.26 7.04 6.57 -84.02 -0.55 6.49 15 8 C -0.45 -11.59 8.83 -38.19 -0.34 -11.93 15 9 H 0.08 1.93 7.44 -52.49 -0.39 1.54 15 10 C 0.08 1.96 5.44 -17.23 -0.09 1.86 15 11 N -0.78 -19.07 10.73 55.58 0.60 -18.48 15 12 Si 0.92 17.70 29.57 -169.99 -5.03 12.67 15 13 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 14 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 15 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 16 N -0.47 -11.95 3.22 -118.75 -0.38 -12.33 15 17 C 0.09 2.11 10.26 59.85 0.61 2.72 15 18 H 0.08 1.19 8.14 -51.92 -0.42 0.77 15 19 H 0.07 1.04 8.12 -51.93 -0.42 0.62 15 20 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 21 H 0.11 2.29 7.90 -52.49 -0.41 1.88 15 22 H 0.14 3.76 6.32 -52.49 -0.33 3.43 15 23 H 0.28 6.26 8.29 -40.82 -0.34 5.92 15 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 15 25 H 0.06 1.34 7.53 -51.93 -0.39 0.95 15 26 H 0.08 1.83 6.23 -51.93 -0.32 1.50 15 LS Contribution 230.51 15.07 3.47 3.47 Total: -1.00 -29.06 230.51 -5.53 -34.59 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.68 Total: 3.97 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.59 Total: -10.49 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.21 Total: -30.81 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.06 -5.53 -34.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963447.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.385 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds