Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21451 * 120.00172 * 2 1 4 4 C 1.41520 * 119.99854 * 180.02562 * 2 1 3 5 5 C 1.39278 * 125.85469 * 359.96867 * 4 2 1 6 6 C 1.38105 * 107.81763 * 180.02562 * 5 4 2 7 7 C 1.40339 * 107.59515 * 0.02562 * 6 5 4 8 8 C 1.39538 * 126.03036 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00053 * 196.14889 * 8 7 6 10 10 C 1.40635 * 119.99983 * 16.14624 * 8 7 6 11 11 N 1.30466 * 119.99708 * 9.41683 * 10 8 7 12 12 Si 1.86795 * 119.99737 * 189.41889 * 10 8 7 13 13 H 1.48503 * 109.47223 * 85.80591 * 12 10 8 14 14 H 1.48504 * 109.47166 * 205.80730 * 12 10 8 15 15 H 1.48497 * 109.47355 * 325.80429 * 12 10 8 16 16 N 1.37554 * 107.93230 * 359.97438 * 7 6 5 17 17 C 1.46502 * 125.81774 * 179.97438 * 16 7 6 18 18 H 1.09008 * 109.46991 * 240.00054 * 1 2 3 19 19 H 1.09002 * 109.47049 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47842 * 119.99992 * 1 2 3 21 21 H 1.07997 * 126.08885 * 0.05112 * 5 4 2 22 22 H 1.07991 * 126.19919 * 179.73913 * 6 5 4 23 23 H 0.96998 * 119.99593 * 179.97438 * 11 10 8 24 24 H 1.08996 * 109.47296 * 270.01484 * 17 16 7 25 25 H 1.09002 * 109.47128 * 30.01985 * 17 16 7 26 26 H 1.09004 * 109.47167 * 150.01993 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0518 0.0000 4 6 2.2145 -1.2256 -0.0005 5 6 1.6448 -2.4965 -0.0005 6 6 2.6717 -3.4200 -0.0006 7 6 3.8816 -2.7090 0.0000 8 6 5.1610 -3.2660 0.0006 9 1 6.0146 -2.6579 0.2611 10 6 5.3388 -4.6194 -0.3380 11 7 4.3432 -5.3055 -0.8280 12 14 7.0005 -5.4346 -0.0858 13 1 7.0997 -5.9354 1.3087 14 1 7.1429 -6.5710 -1.0312 15 1 8.0799 -4.4456 -0.3346 16 7 3.5837 -1.3661 -0.0003 17 6 4.5578 -0.2718 0.0006 18 1 -0.3633 -0.5139 0.8901 19 1 -0.3633 1.0277 0.0005 20 1 -0.3634 -0.5138 -0.8899 21 1 0.5882 -2.7200 -0.0008 22 1 2.5632 -4.4944 0.0034 23 1 4.4659 -6.2388 -1.0619 24 1 4.7987 -0.0006 1.0285 25 1 5.4645 -0.5920 -0.5127 26 1 4.1349 0.5915 -0.5132 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963447.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -27.309426 kcal Electronic energy + Delta-G solvation = -11768.222724 eV Core-core repulsion = 9618.478966 eV Total energy + Delta-G solvation = -2149.743759 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.43419 -39.07534 -35.60302 -33.51418 -31.53459 -30.04694 -27.10285 -26.64671 -22.64777 -21.32943 -19.45344 -18.76902 -17.47142 -16.62481 -16.15680 -15.60683 -15.17049 -14.95984 -14.22896 -13.89653 -13.59104 -13.35545 -13.02772 -12.98478 -12.84939 -12.61399 -12.37738 -12.13748 -11.75423 -11.17608 -10.30356 -9.25578 -8.92120 -8.68544 -6.35810 0.53772 1.40146 1.42702 1.55369 2.12476 2.18918 2.61337 2.76373 3.27015 3.90031 4.25014 4.48629 4.51337 4.72643 4.79221 4.79674 4.88506 5.01623 5.10435 5.33955 5.62692 5.75542 5.94019 6.18491 6.57249 6.79423 6.93501 7.16827 7.29264 8.28668 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.067869 B = 0.010616 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.463259 B = 2636.789886 C = 3005.728342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.393 3.607 3 O -0.572 6.572 4 C -0.232 4.232 5 C -0.085 4.085 6 C -0.298 4.298 7 C 0.234 3.766 8 C -0.483 4.483 9 H 0.081 0.919 10 C 0.043 3.957 11 N -0.805 5.805 12 Si 1.000 3.000 13 H -0.260 1.260 14 H -0.264 1.264 15 H -0.259 1.259 16 N -0.484 5.484 17 C 0.097 3.903 18 H 0.100 0.900 19 H 0.082 0.918 20 H 0.099 0.901 21 H 0.152 0.848 22 H 0.133 0.867 23 H 0.294 0.706 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 0.033 0.830 1.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.287 3.713 3 O -0.463 6.463 4 C -0.333 4.333 5 C -0.111 4.111 6 C -0.319 4.319 7 C 0.119 3.881 8 C -0.517 4.517 9 H 0.100 0.900 10 C -0.177 4.177 11 N -0.431 5.431 12 Si 0.819 3.181 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.183 1.183 16 N -0.169 5.169 17 C -0.045 4.045 18 H 0.119 0.881 19 H 0.100 0.900 20 H 0.117 0.883 21 H 0.169 0.831 22 H 0.151 0.849 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.811 0.673 0.733 1.284 hybrid contribution 0.636 -0.439 0.039 0.774 sum -0.175 0.234 0.772 0.826 Atomic orbital electron populations 1.21952 0.91020 1.04472 1.05239 1.20577 0.93048 0.85651 0.72001 1.90391 1.72971 1.35679 1.47236 1.19600 0.83702 0.96493 1.33537 1.21492 0.98757 0.90990 0.99889 1.21463 0.91169 0.98810 1.20447 1.18825 0.95774 0.80711 0.92828 1.19024 0.92184 0.96583 1.43934 0.90050 1.26815 1.03076 0.96708 0.91057 1.69694 1.34514 1.10639 1.28247 0.84945 0.75801 0.77921 0.79395 1.18460 1.18787 1.18270 1.44201 1.05258 1.05441 1.61975 1.21680 0.92002 0.89205 1.01611 0.88126 0.89951 0.88260 0.83066 0.84924 0.89463 0.92955 0.90719 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 9.53 71.24 0.68 -4.45 15 2 C 0.39 17.02 7.06 26.49 0.19 17.21 15 3 O -0.57 -27.67 15.20 -3.56 -0.05 -27.72 15 4 C -0.23 -11.27 6.71 39.29 0.26 -11.01 15 5 C -0.09 -3.96 10.21 22.49 0.23 -3.73 15 6 C -0.30 -15.70 9.61 22.75 0.22 -15.48 15 7 C 0.23 12.74 6.57 39.07 0.26 13.00 15 8 C -0.48 -25.12 8.83 23.17 0.20 -24.91 15 9 H 0.08 4.02 7.44 -2.91 -0.02 4.00 15 10 C 0.04 2.03 5.44 85.48 0.46 2.50 15 11 N -0.81 -39.76 10.73 21.95 0.24 -39.52 15 12 Si 1.00 35.72 29.57 68.60 2.03 37.75 15 13 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 14 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 15 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 16 N -0.48 -24.96 3.22 -529.61 -1.70 -26.66 15 17 C 0.10 4.33 10.26 127.77 1.31 5.65 15 18 H 0.10 2.65 8.14 -2.38 -0.02 2.63 15 19 H 0.08 2.26 8.12 -2.39 -0.02 2.24 15 20 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 21 H 0.15 5.65 7.90 -2.91 -0.02 5.63 15 22 H 0.13 7.14 6.32 -2.92 -0.02 7.12 15 23 H 0.29 12.90 8.29 -92.71 -0.77 12.13 15 24 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.07 3.10 7.53 -2.39 -0.02 3.09 15 26 H 0.08 3.52 6.23 -2.39 -0.01 3.50 15 Total: -1.00 -62.54 230.51 5.50 -57.04 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.18 Total: 20.35 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 3.81 Total: -21.23 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -1.47 Total: -66.18 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -62.54 5.50 -57.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963447.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.731 kcal (2) G-P(sol) polarization free energy of solvation -62.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds