Wall clock time and date at job start Mon Mar 30 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47085 * 299.99992 * 3 2 1 6 6 H 1.48500 * 109.47461 * 59.99990 * 3 2 1 7 7 C 1.37881 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99940 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.39314 * 120.00267 * 179.97438 * 10 9 7 12 12 C 1.39087 * 119.62358 * 0.02562 * 11 10 9 13 13 C 1.38285 * 119.16932 * 179.97438 * 12 11 10 14 14 C 1.39417 * 118.44666 * 0.02562 * 13 12 11 15 15 N 1.40043 * 120.40612 * 180.02562 * 14 13 12 16 16 C 1.38627 * 119.18282 * 359.97438 * 14 13 12 17 17 N 1.31997 * 120.75680 * 0.03217 * 16 14 13 18 18 H 0.96999 * 119.99849 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47367 * 59.99559 * 9 7 2 20 20 H 1.08998 * 109.47332 * 299.99636 * 9 7 2 21 21 H 0.97005 * 119.99841 * 0.02562 * 10 9 7 22 22 H 1.07998 * 120.41560 * 0.25202 * 12 11 10 23 23 H 1.08001 * 120.77431 * 180.02562 * 13 12 11 24 24 H 0.97001 * 119.99864 * 359.97438 * 15 14 13 25 25 H 0.96996 * 119.99730 * 179.97438 * 15 14 13 26 26 H 1.07998 * 119.62657 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7385 -4.9262 0.0011 12 6 0.3694 -5.1713 0.0011 13 6 -0.0812 -6.4787 0.0011 14 6 0.8613 -7.5060 0.0016 15 7 0.4505 -8.8448 0.0011 16 6 2.2101 -7.1859 0.0016 17 7 2.6049 -5.9263 0.0017 18 1 -0.4850 0.8401 0.0004 19 1 0.6246 -2.5570 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 3.1567 -3.4355 0.0009 22 1 -0.3329 -4.3509 -0.0034 23 1 -1.1386 -6.6987 0.0006 24 1 -0.4949 -9.0620 0.0007 25 1 1.1113 -9.5548 0.0011 26 1 2.9464 -7.9760 0.0016 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964719.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:23 Heat of formation + Delta-G solvation = 33.252032 kcal Electronic energy + Delta-G solvation = -11229.616566 eV Core-core repulsion = 9114.791701 eV Total energy + Delta-G solvation = -2114.824866 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.55298 -35.67272 -33.81646 -32.28752 -31.19989 -28.16585 -25.94232 -23.47340 -22.44531 -20.94831 -17.59261 -16.69911 -16.27620 -15.86603 -14.93640 -14.45685 -13.89157 -13.64896 -13.03375 -12.57007 -12.43955 -12.05390 -11.75953 -11.08077 -10.86064 -10.76033 -10.19637 -9.38343 -9.15617 -8.86782 -8.73279 -8.23183 -6.23777 -6.19106 -4.23370 1.84499 2.23063 3.24391 3.31809 3.36206 4.09015 4.28202 4.50059 4.59400 5.18496 5.24682 5.34353 5.69442 5.85405 6.33438 6.47509 6.61751 6.94507 7.20313 7.44141 7.65446 7.76403 7.96660 7.99356 8.07302 8.73192 8.79825 9.08974 9.43569 10.91697 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.100034 B = 0.007119 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.837918 B = 3932.012279 C = 4196.706573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.257 3.743 10 N -0.714 5.714 11 C 0.369 3.631 12 C -0.195 4.195 13 C -0.105 4.105 14 C 0.077 3.923 15 N -0.887 5.887 16 C 0.076 3.924 17 N -0.527 5.527 18 H 0.265 0.735 19 H 0.021 0.979 20 H 0.021 0.979 21 H 0.394 0.606 22 H 0.135 0.865 23 H 0.123 0.877 24 H 0.391 0.609 25 H 0.391 0.609 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -12.292 0.000 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.135 3.865 10 N -0.344 5.344 11 C 0.130 3.870 12 C -0.221 4.221 13 C -0.136 4.136 14 C -0.028 4.028 15 N -0.431 5.431 16 C -0.086 4.086 17 N -0.245 5.245 18 H 0.074 0.926 19 H 0.039 0.961 20 H 0.039 0.961 21 H 0.228 0.772 22 H 0.153 0.847 23 H 0.140 0.860 24 H 0.218 0.782 25 H 0.218 0.782 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.423 -11.682 -0.001 11.689 hybrid contribution -0.348 0.422 -0.001 0.547 sum 0.075 -11.260 -0.001 11.260 Atomic orbital electron populations 1.69957 1.06067 1.27207 1.49610 1.24929 0.94950 0.99452 0.94708 0.86341 0.79978 0.82821 0.77697 1.19583 1.20810 1.20803 1.21246 0.93551 0.90260 1.52336 0.91762 1.19112 0.88505 0.82330 0.96562 1.45228 1.10029 1.01046 1.78076 1.18492 0.88769 0.86424 0.93322 1.21351 0.95303 0.97079 1.08392 1.20751 0.98419 0.91524 1.02874 1.18430 0.94178 0.85468 1.04752 1.42047 1.09126 1.03207 1.88755 1.21703 0.91893 0.92675 1.02357 1.67053 1.38307 0.99119 1.19998 0.92552 0.96143 0.96131 0.77190 0.84743 0.85954 0.78218 0.78157 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.54 -14.72 9.28 -34.44 -0.32 -15.03 15 8 H 0.06 1.72 7.60 -52.49 -0.40 1.32 15 9 C 0.26 6.62 4.65 -5.19 -0.02 6.59 15 10 N -0.71 -16.31 5.73 -61.54 -0.35 -16.66 15 11 C 0.37 7.82 7.65 -154.80 -1.18 6.63 15 12 C -0.19 -3.79 9.32 -39.25 -0.37 -4.15 15 13 C -0.11 -1.70 10.04 -39.13 -0.39 -2.09 15 14 C 0.08 1.14 6.79 -83.52 -0.57 0.58 15 15 N -0.89 -9.33 9.11 32.53 0.30 -9.03 15 16 C 0.08 1.24 11.05 -17.34 -0.19 1.04 15 17 N -0.53 -10.43 10.39 -12.23 -0.13 -10.56 15 18 H 0.26 7.14 8.31 -40.82 -0.34 6.81 15 19 H 0.02 0.56 7.92 -51.93 -0.41 0.15 15 20 H 0.02 0.57 7.93 -51.93 -0.41 0.15 15 21 H 0.39 8.75 8.45 -40.82 -0.34 8.40 15 22 H 0.13 2.69 6.70 -52.49 -0.35 2.34 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.39 3.40 8.86 -40.82 -0.36 3.04 15 25 H 0.39 3.27 8.85 -40.82 -0.36 2.91 15 26 H 0.14 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 234.34 15.07 3.53 3.53 Total: -1.00 -29.92 234.34 -6.70 -36.62 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -2.62 Total: 9.72 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.14 Total: -4.80 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.55 Total: -61.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.92 -6.70 -36.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964719.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.876 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds