Wall clock time and date at job start Mon Mar 30 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47044 * 299.99725 * 3 2 1 6 6 H 1.48504 * 109.47015 * 59.99336 * 3 2 1 7 7 C 1.37873 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99875 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46986 * 179.97438 * 9 7 2 11 11 N 1.33165 * 125.52273 * 90.00009 * 10 9 7 12 12 C 1.31162 * 109.83493 * 180.02562 * 11 10 9 13 13 N 1.34124 * 108.01194 * 359.89941 * 12 11 10 14 14 N 1.30647 * 125.52729 * 269.76977 * 10 9 7 15 15 C 1.46880 * 111.34526 * 180.17775 * 13 12 11 16 16 C 1.54425 * 105.49945 * 343.03308 * 15 13 12 17 17 C 1.51477 * 141.94269 * 179.81841 * 12 11 10 18 18 H 0.97002 * 119.99926 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46693 * 60.00142 * 9 7 2 20 20 H 1.08996 * 109.47396 * 299.99739 * 9 7 2 21 21 H 1.09003 * 110.24214 * 102.03683 * 15 13 12 22 22 H 1.08998 * 110.24193 * 224.02309 * 15 13 12 23 23 H 1.09007 * 110.98538 * 267.39044 * 16 15 13 24 24 H 1.08994 * 111.02318 * 143.59398 * 16 15 13 25 25 H 1.09004 * 110.47965 * 315.25341 * 17 12 11 26 26 H 1.08999 * 110.47849 * 77.74764 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7330 -4.2327 1.0843 12 6 3.5540 -5.1922 0.7297 13 7 3.5880 -5.2347 -0.6105 14 7 2.7203 -4.2244 -1.0627 15 6 4.4874 -6.2926 -1.0892 16 6 5.3728 -6.6605 0.1214 17 6 4.4668 -6.2547 1.3062 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.9114 -7.1597 -1.4124 22 1 5.1036 -5.9217 -1.9082 23 1 6.2964 -6.0815 0.1199 24 1 5.5847 -7.7295 0.1403 25 1 5.0642 -5.8437 2.1200 26 1 3.8857 -7.1086 1.6545 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022175.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:59 Heat of formation + Delta-G solvation = 93.213374 kcal Electronic energy + Delta-G solvation = -11523.263704 eV Core-core repulsion = 9411.038957 eV Total energy + Delta-G solvation = -2112.224747 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.72366 -36.69694 -33.11493 -31.38657 -30.19716 -27.85938 -27.12547 -23.51596 -21.55003 -20.02642 -19.57117 -16.64176 -16.26987 -15.40710 -14.57346 -14.24447 -13.97056 -13.34290 -13.18257 -12.36920 -11.91814 -11.70678 -11.36004 -11.26674 -10.88767 -10.69598 -10.63624 -9.89914 -9.48939 -9.13215 -9.00128 -8.41454 -8.37644 -6.00313 -4.02038 2.27793 2.71360 3.35249 3.41290 3.47225 3.79145 3.92157 4.38378 4.50887 4.60416 4.72723 5.25671 5.35149 5.35982 5.41615 5.60799 5.77640 5.90497 5.94835 7.09237 7.20814 7.36380 7.58460 7.64184 7.95434 8.31219 8.98535 9.03051 9.59859 11.10904 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.068982 B = 0.008451 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.806675 B = 3312.486423 C = 3399.936807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.104 3.896 10 C 0.272 3.728 11 N -0.527 5.527 12 C 0.229 3.771 13 N -0.420 5.420 14 N -0.312 5.312 15 C 0.128 3.872 16 C -0.130 4.130 17 C -0.043 4.043 18 H 0.263 0.737 19 H 0.044 0.956 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.013 -13.456 0.565 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.065 3.935 10 C -0.009 4.009 11 N -0.256 5.256 12 C -0.048 4.048 13 N -0.211 5.211 14 N -0.138 5.138 15 C 0.005 3.995 16 C -0.169 4.169 17 C -0.083 4.083 18 H 0.072 0.928 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.588 -13.043 -0.061 16.188 hybrid contribution 0.612 0.751 -0.060 0.971 sum 10.200 -12.292 -0.121 15.974 Atomic orbital electron populations 1.69960 1.05953 1.26829 1.50567 1.24940 0.94927 0.99197 0.95108 0.86388 0.79988 0.83183 0.77585 1.19827 1.20902 1.20816 1.20913 0.93008 0.89524 1.51004 0.92635 1.17830 0.90448 0.85765 0.99492 1.25557 0.96196 0.95814 0.83338 1.70085 1.14050 1.09304 1.32131 1.25134 0.97586 0.96695 0.85429 1.51570 1.35215 1.26726 1.07606 1.78159 1.10287 1.02832 1.22544 1.22145 0.90773 0.88179 0.98365 1.22833 0.98312 1.03256 0.92477 1.20701 0.94807 0.94449 0.98319 0.92783 0.93749 0.93168 0.89656 0.89301 0.89360 0.87926 0.88175 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 15 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.50 -15.24 9.09 -34.44 -0.31 -15.55 15 8 H 0.06 1.70 7.74 -52.48 -0.41 1.30 15 9 C 0.10 2.98 5.60 -29.03 -0.16 2.81 15 10 C 0.27 7.11 7.33 -156.97 -1.15 5.96 15 11 N -0.53 -12.74 11.20 -7.94 -0.09 -12.83 15 12 C 0.23 4.34 8.66 -155.31 -1.34 3.00 15 13 N -0.42 -8.04 4.89 -57.04 -0.28 -8.32 15 14 N -0.31 -7.67 12.80 32.40 0.41 -7.26 15 15 C 0.13 1.49 7.78 -3.09 -0.02 1.47 15 16 C -0.13 -1.03 7.18 -25.16 -0.18 -1.21 15 17 C -0.04 -0.47 6.86 -26.68 -0.18 -0.66 15 18 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 19 H 0.04 1.30 8.14 -51.93 -0.42 0.88 15 20 H 0.05 1.47 8.14 -51.93 -0.42 1.05 15 21 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.10 0.45 8.14 -51.93 -0.42 0.02 15 25 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.46 15 LS Contribution 232.17 15.07 3.50 3.50 Total: -1.00 -36.12 232.17 -7.12 -43.24 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: -2.92 Total: -6.82 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.46 Total: -2.51 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.78 Total: -54.84 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -36.12 -7.12 -43.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022175.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.451 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds