Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38153 * 119.93148 * 89.99970 * 10 9 7 12 12 C 1.38933 * 120.03575 * 179.97438 * 11 10 9 13 13 N 1.39659 * 120.05284 * 179.97438 * 12 11 10 14 14 C 1.38840 * 119.90353 * 359.97438 * 12 11 10 15 15 C 1.38572 * 119.87484 * 0.02562 * 14 12 11 16 16 O 1.35897 * 120.02105 * 179.97438 * 15 14 12 17 17 C 1.38167 * 119.93505 * 269.72832 * 10 9 7 18 18 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 21 21 H 1.07998 * 119.98811 * 359.97438 * 11 10 9 22 22 H 0.97009 * 119.99787 * 0.02562 * 13 12 11 23 23 H 0.97000 * 120.00788 * 180.02562 * 13 12 11 24 24 H 1.08002 * 120.06266 * 179.97438 * 14 12 11 25 25 H 0.96704 * 113.99333 * 89.99527 * 16 15 14 26 26 H 1.08000 * 119.95643 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 6 4.2431 -3.2640 -1.2001 12 6 4.7068 -4.5737 -1.2036 13 7 4.9382 -5.2304 -2.4143 14 6 4.9397 -5.2288 -0.0019 15 6 4.7084 -4.5741 1.1973 16 8 4.9349 -5.2126 2.3753 17 6 4.2495 -3.2639 1.1945 18 1 -0.4850 0.8401 0.0004 19 1 3.8751 -0.6805 0.8889 20 1 3.8746 -0.6799 -0.8910 21 1 4.0619 -2.7532 -2.1342 22 1 4.7756 -4.7719 -3.2536 23 1 5.2615 -6.1449 -2.4160 24 1 5.2997 -6.2471 -0.0017 25 1 5.8333 -5.1026 2.7158 26 1 4.0738 -2.7521 2.1292 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260036555.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -54.818749 kcal Electronic energy + Delta-G solvation = -11405.174409 eV Core-core repulsion = 9254.237756 eV Total energy + Delta-G solvation = -2150.936653 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.64769 -38.02185 -36.07052 -34.52423 -32.25202 -29.51290 -29.03822 -24.98157 -23.11162 -21.86296 -18.99434 -18.91188 -17.79806 -17.14438 -16.64199 -16.20328 -15.62120 -15.24958 -14.88635 -14.14278 -13.74382 -13.60117 -13.09261 -12.77081 -12.29858 -12.26363 -11.94383 -11.68620 -11.29008 -11.01124 -10.78446 -9.38020 -8.38214 -8.29509 -6.35270 0.49591 0.74005 1.37170 1.39761 1.51963 2.36299 2.91743 2.96858 3.04517 3.51331 4.11016 4.35345 4.42513 4.73585 4.78295 5.02498 5.11584 5.21299 5.38204 5.55523 5.61792 5.90346 6.01708 6.26857 6.61022 6.70913 6.96608 7.09466 7.27932 8.87306 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.043769 B = 0.009931 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.571298 B = 2818.746799 C = 3104.472554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.522 4.522 8 H 0.024 0.976 9 C 0.020 3.980 10 C 0.000 4.000 11 C -0.223 4.223 12 C 0.234 3.766 13 N -0.863 5.863 14 C -0.244 4.244 15 C 0.150 3.850 16 O -0.508 6.508 17 C -0.226 4.226 18 H 0.268 0.732 19 H 0.032 0.968 20 H 0.035 0.965 21 H 0.120 0.880 22 H 0.406 0.594 23 H 0.409 0.591 24 H 0.146 0.854 25 H 0.409 0.591 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.201 -7.783 -2.134 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.560 4.560 8 H 0.042 0.958 9 C -0.017 4.017 10 C -0.001 4.001 11 C -0.246 4.246 12 C 0.128 3.872 13 N -0.404 5.404 14 C -0.268 4.268 15 C 0.105 3.895 16 O -0.321 6.321 17 C -0.246 4.246 18 H 0.077 0.923 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.138 0.862 22 H 0.236 0.764 23 H 0.239 0.761 24 H 0.164 0.836 25 H 0.268 0.732 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.479 -7.851 -2.160 15.748 hybrid contribution 0.078 0.730 -0.124 0.745 sum 13.557 -7.121 -2.284 15.483 Atomic orbital electron populations 1.70069 1.08401 1.28338 1.52255 1.26025 0.95655 1.03529 0.93834 0.85599 0.79462 0.77756 0.79513 1.18657 1.20787 1.16855 1.21139 0.90831 0.93010 1.51015 0.95752 1.18685 0.94274 0.91039 0.97720 1.19742 0.91173 0.96401 0.92752 1.20569 1.10668 0.95251 0.98067 1.17518 0.91654 0.90589 0.87408 1.42312 1.76211 1.17669 1.04199 1.20781 1.13707 1.02082 0.90184 1.18135 0.96686 0.89281 0.85398 1.84727 1.37843 1.73662 1.35887 1.21103 1.09841 0.95660 0.98029 0.92303 0.94995 0.94709 0.86189 0.76447 0.76109 0.83617 0.73169 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 15 2 C 0.01 0.38 5.47 84.65 0.46 0.84 15 3 Si 0.95 44.36 27.47 68.60 1.88 46.24 15 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.25 -10.55 6.54 99.48 0.65 -9.90 15 7 C -0.52 -31.33 9.65 25.60 0.25 -31.08 15 8 H 0.02 1.64 7.98 -2.91 -0.02 1.62 15 9 C 0.02 0.99 4.17 29.10 0.12 1.11 15 10 C 0.00 0.01 5.06 -19.90 -0.10 -0.09 15 11 C -0.22 -8.56 9.54 22.42 0.21 -8.34 15 12 C 0.23 7.33 6.75 38.20 0.26 7.59 15 13 N -0.86 -18.66 9.09 -51.41 -0.47 -19.13 15 14 C -0.24 -7.46 9.83 22.49 0.22 -7.23 15 15 C 0.15 5.17 6.70 22.49 0.15 5.32 15 16 O -0.51 -14.70 13.50 -92.39 -1.25 -15.95 15 17 C -0.23 -9.26 9.63 22.39 0.22 -9.04 15 18 H 0.27 15.85 8.31 -92.70 -0.77 15.08 15 19 H 0.03 1.53 7.14 -2.39 -0.02 1.51 15 20 H 0.03 1.61 7.51 -2.39 -0.02 1.59 15 21 H 0.12 4.43 8.06 -2.91 -0.02 4.41 15 22 H 0.41 7.62 8.84 -92.70 -0.82 6.80 15 23 H 0.41 6.45 8.84 -92.71 -0.82 5.63 15 24 H 0.15 3.52 8.06 -2.91 -0.02 3.49 15 25 H 0.41 7.00 9.06 -74.05 -0.67 6.33 15 26 H 0.11 4.61 8.06 -2.91 -0.02 4.59 15 Total: -1.00 -73.09 233.45 1.11 -71.98 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -1.14 Total: 18.22 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 1.79 Total: -40.92 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -0.17 Total: -79.56 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -1.25 Total: -15.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -73.09 1.11 -71.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036555.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.161 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds