Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31197 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48504 * 109.47496 * 240.00064 * 3 2 1 5 5 H 1.48503 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47461 * 119.99875 * 3 2 1 7 7 C 1.39564 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99272 * 160.81811 * 7 2 1 9 9 C 1.41184 * 119.99899 * 340.82057 * 7 2 1 10 10 C 1.40559 * 126.63674 * 326.49944 * 9 7 2 11 11 N 1.37731 * 126.56059 * 359.96115 * 10 9 7 12 12 N 1.35155 * 106.87467 * 180.22381 * 10 9 7 13 13 H 0.97001 * 125.69885 * 179.72833 * 12 10 9 14 14 N 1.39850 * 108.59580 * 359.61846 * 12 10 9 15 15 C 1.30256 * 109.54542 * 0.39894 * 14 12 10 16 16 C 1.50693 * 125.87651 * 179.78734 * 15 14 12 17 17 C 1.52995 * 117.49892 * 8.59372 * 16 15 14 18 18 C 1.52998 * 60.00346 * 252.51208 * 17 16 15 19 19 H 0.96999 * 119.99994 * 356.83160 * 1 2 3 20 20 H 0.96999 * 119.99910 * 352.06968 * 11 10 9 21 21 H 0.96995 * 119.99674 * 172.06994 * 11 10 9 22 22 H 1.09001 * 115.55337 * 154.30046 * 16 15 14 23 23 H 1.09008 * 117.49871 * 0.02562 * 17 16 15 24 24 H 1.09006 * 117.50225 * 145.02030 * 17 16 15 25 25 H 1.08996 * 117.49784 * 252.51261 * 18 17 16 26 26 H 1.08999 * 117.51763 * 107.47585 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2459 1.6176 0.0000 4 1 3.0997 1.6964 -1.2125 5 1 1.2810 2.7464 -0.0006 6 1 3.0997 1.6964 1.2125 7 6 2.0098 -1.2087 0.0005 8 1 3.0448 -1.2347 -0.3068 9 6 1.3625 -2.3972 0.4028 10 6 0.3633 -2.5174 1.3839 11 7 -0.1723 -1.4974 2.1387 12 7 0.0328 -3.8263 1.4491 13 1 -0.6297 -4.2140 2.0421 14 7 0.8040 -4.5279 0.5170 15 6 1.5947 -3.7007 -0.1053 16 6 2.5853 -4.0659 -1.1805 17 6 2.5400 -5.4941 -1.7273 18 6 3.6896 -5.0601 -0.8156 19 1 -0.4850 0.8388 0.0464 20 1 0.2169 -0.6097 2.1002 21 1 -0.9387 -1.6667 2.7086 22 1 2.8376 -3.2673 -1.8783 23 1 1.7934 -6.1695 -1.3095 24 1 2.7623 -5.6354 -2.7850 25 1 4.6681 -4.9159 -1.2735 26 1 3.6996 -5.4497 0.2023 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260084980.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 75.022845 kcal Electronic energy + Delta-G solvation = -11880.151507 eV Core-core repulsion = 9767.137960 eV Total energy + Delta-G solvation = -2113.013547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.19767 -37.72691 -35.52220 -34.11330 -31.46311 -29.48378 -26.05183 -24.43951 -23.07665 -21.44878 -19.83980 -18.86298 -18.07785 -16.57515 -16.45418 -15.94396 -15.48827 -15.04493 -14.43918 -14.04016 -13.09697 -12.87114 -12.57251 -12.26037 -12.13528 -11.89128 -11.73593 -11.36279 -10.96663 -10.84137 -10.43383 -9.27316 -8.28486 -7.87206 -5.70258 1.45356 1.50177 1.58309 1.68084 2.35557 2.42252 2.48946 3.21653 3.57798 3.68709 4.13182 4.17154 4.40191 4.58936 4.87617 5.05937 5.21407 5.42302 5.48296 5.53473 5.72209 6.10039 6.54704 6.66669 7.12687 7.25506 7.38112 7.61925 7.76893 8.87988 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.014544 C = 0.011148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.325975 B = 1924.709334 C = 2511.074242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.459 4.459 8 H 0.053 0.947 9 C -0.142 4.142 10 C 0.291 3.709 11 N -0.821 5.821 12 N -0.508 5.508 13 H 0.430 0.570 14 N -0.362 5.362 15 C 0.066 3.934 16 C -0.085 4.085 17 C -0.158 4.158 18 C -0.154 4.154 19 H 0.267 0.733 20 H 0.408 0.592 21 H 0.387 0.613 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -3.186 1.625 4.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.495 4.495 8 H 0.071 0.929 9 C -0.158 4.158 10 C 0.063 3.937 11 N -0.371 5.371 12 N -0.225 5.225 13 H 0.273 0.727 14 N -0.190 5.190 15 C -0.097 4.097 16 C -0.105 4.105 17 C -0.195 4.195 18 C -0.192 4.192 19 H 0.076 0.924 20 H 0.241 0.759 21 H 0.215 0.785 22 H 0.125 0.875 23 H 0.104 0.896 24 H 0.135 0.865 25 H 0.137 0.863 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.610 -4.253 1.605 4.823 hybrid contribution -0.314 1.929 0.512 2.020 sum 1.297 -2.325 2.116 3.400 Atomic orbital electron populations 1.70129 1.07322 1.27962 1.44681 1.26042 0.95266 1.01965 0.95086 0.85699 0.78764 0.78772 0.78954 1.20143 1.20600 1.19552 1.18377 0.96729 0.91685 1.42735 0.92860 1.17336 1.04583 0.93481 1.00366 1.18564 0.98711 0.81183 0.95279 1.40920 1.36738 1.09988 1.49442 1.45309 1.37428 1.03589 1.36218 0.72747 1.76293 1.13035 1.19636 1.10057 1.21603 0.97666 0.92697 0.97699 1.20120 0.98507 0.93761 0.98093 1.22938 1.00992 0.95644 0.99912 1.22953 0.94177 1.01831 1.00276 0.92379 0.75861 0.78538 0.87516 0.89594 0.86517 0.86347 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.09 10.72 21.78 0.23 -45.86 15 2 C 0.02 1.10 4.33 85.11 0.37 1.47 15 3 Si 0.95 40.72 29.60 68.60 2.03 42.75 15 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.46 -25.58 9.07 23.31 0.21 -25.36 15 8 H 0.05 2.96 7.91 -2.91 -0.02 2.93 15 9 C -0.14 -7.81 5.58 -21.11 -0.12 -7.92 15 10 C 0.29 14.30 7.96 133.00 1.06 15.36 15 11 N -0.82 -35.00 8.01 -53.76 -0.43 -35.43 15 12 N -0.51 -22.65 7.32 -53.75 -0.39 -23.04 15 13 H 0.43 15.44 8.96 -213.48 -1.91 13.53 15 14 N -0.36 -17.43 12.15 -46.44 -0.56 -17.99 15 15 C 0.07 3.30 6.80 43.67 0.30 3.60 15 16 C -0.08 -3.55 6.04 -11.54 -0.07 -3.62 15 17 C -0.16 -5.25 10.14 30.59 0.31 -4.94 15 18 C -0.15 -5.15 10.23 30.60 0.31 -4.83 15 19 H 0.27 13.28 8.31 -92.71 -0.77 12.51 15 20 H 0.41 18.38 6.49 -92.71 -0.60 17.78 15 21 H 0.39 13.35 8.95 -92.71 -0.83 12.52 15 22 H 0.11 4.56 8.14 -2.39 -0.02 4.54 15 23 H 0.09 3.04 7.89 -2.38 -0.02 3.02 15 24 H 0.12 3.15 8.14 -2.38 -0.02 3.13 15 25 H 0.12 3.21 8.14 -2.39 -0.02 3.19 15 26 H 0.08 2.81 8.14 -2.39 -0.02 2.80 15 Total: -1.00 -63.56 230.36 1.13 -62.43 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -2.11 Total: 43.39 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 2.37 Total: -26.24 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -1.15 Total: -122.32 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -63.56 1.13 -62.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084980.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.450 kcal (2) G-P(sol) polarization free energy of solvation -63.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds