Wall clock time and date at job start Mon Mar 30 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 120.00333 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99784 * 3 2 1 5 5 H 1.48490 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00062 * 3 2 1 7 7 C 1.39992 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.41730 * 119.99877 * 0.28009 * 7 2 1 10 10 N 1.32224 * 127.46829 * 359.40416 * 9 7 2 11 11 O 1.20773 * 111.32300 * 179.79704 * 10 9 7 12 12 C 1.34056 * 113.17711 * 0.49771 * 11 10 9 13 13 C 1.35027 * 107.15168 * 359.69729 * 12 11 10 14 14 C 1.50700 * 128.35831 * 179.97438 * 13 12 11 15 15 C 1.53785 * 113.61516 * 37.54093 * 14 13 12 16 16 C 1.53783 * 87.07972 * 220.01793 * 15 14 13 17 17 C 1.53779 * 87.08082 * 25.43316 * 16 15 14 18 18 H 0.97005 * 119.99633 * 0.02562 * 1 2 3 19 19 H 1.07991 * 126.41970 * 179.73084 * 12 11 10 20 20 H 1.09001 * 112.84750 * 168.85085 * 14 13 12 21 21 H 1.08999 * 113.61078 * 334.56793 * 15 14 13 22 22 H 1.09002 * 113.61066 * 105.46647 * 15 14 13 23 23 H 1.08997 * 113.61597 * 270.87789 * 16 15 14 24 24 H 1.08998 * 113.60904 * 139.98220 * 16 15 14 25 25 H 1.09002 * 113.60869 * 220.01371 * 17 16 15 26 26 H 1.09003 * 113.69291 * 89.12508 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6962 -1.2125 5 1 1.2767 2.7464 -0.0006 6 1 3.0953 1.6964 1.2124 7 6 2.0073 -1.2124 0.0005 8 1 3.0874 -1.2124 0.0001 9 6 1.2986 -2.4398 -0.0049 10 7 -0.0124 -2.6116 0.0001 11 8 -0.3017 -3.7841 -0.0109 12 6 0.7684 -4.5915 -0.0145 13 6 1.8634 -3.8015 -0.0110 14 6 3.3133 -4.2126 -0.0122 15 6 3.6014 -5.4520 -0.8758 16 6 4.5610 -5.9067 0.2366 17 6 3.7131 -5.0642 1.2041 18 1 -0.4850 0.8401 -0.0004 19 1 0.7568 -5.6714 -0.0197 20 1 3.9893 -3.3791 -0.2029 21 1 2.7387 -6.1060 -1.0025 22 1 4.1013 -5.2220 -1.8167 23 1 5.5790 -5.5374 0.1130 24 1 4.5196 -6.9771 0.4383 25 1 4.3033 -4.5213 1.9424 26 1 2.8806 -5.6111 1.6469 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209719.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:13 Heat of formation + Delta-G solvation = 39.548884 kcal Electronic energy + Delta-G solvation = -11795.615757 eV Core-core repulsion = 9648.771192 eV Total energy + Delta-G solvation = -2146.844565 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.41381 -39.49005 -35.82509 -33.26087 -31.62015 -28.23721 -26.57746 -26.36333 -22.74702 -22.00760 -19.85726 -19.06984 -17.73051 -17.43731 -16.56141 -16.26242 -15.55473 -14.69718 -14.35335 -13.27791 -13.23407 -13.08062 -12.98672 -12.79300 -12.65881 -11.93942 -11.68066 -11.51683 -11.25375 -11.22349 -10.66995 -10.05602 -9.60483 -8.51174 -6.54147 1.33810 1.36128 1.38540 1.50521 2.09998 2.22831 3.23727 3.33460 3.83661 3.94758 4.01337 4.28074 4.43550 4.61367 4.75542 4.86195 4.94459 5.02291 5.12858 5.18116 5.19788 5.40593 5.51363 5.71054 5.78254 6.28797 6.67073 6.90969 8.47986 8.73358 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.041581 B = 0.012217 C = 0.009888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.228164 B = 2291.278514 C = 2831.078601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.017 3.983 3 Si 0.995 3.005 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.479 4.479 8 H 0.090 0.910 9 C 0.124 3.876 10 N -0.453 5.453 11 O 0.013 5.987 12 C -0.089 4.089 13 C -0.249 4.249 14 C -0.035 4.035 15 C -0.128 4.128 16 C -0.122 4.122 17 C -0.131 4.131 18 H 0.279 0.721 19 H 0.230 0.770 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.536 -7.850 0.174 11.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.517 4.517 8 H 0.108 0.892 9 C -0.024 4.024 10 N -0.183 5.183 11 O -0.033 6.033 12 C -0.168 4.168 13 C -0.254 4.254 14 C -0.054 4.054 15 C -0.165 4.165 16 C -0.159 4.159 17 C -0.169 4.169 18 H 0.089 0.911 19 H 0.246 0.754 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.244 -7.100 0.184 10.145 hybrid contribution 0.627 0.647 -0.010 0.901 sum 7.871 -6.453 0.174 10.180 Atomic orbital electron populations 1.70011 1.09145 1.29597 1.36485 1.26946 0.95718 1.04916 0.92235 0.85075 0.78302 0.74971 0.80183 1.18018 1.19671 1.18016 1.19012 0.94282 0.88836 1.49580 0.89240 1.22277 0.88488 0.94841 0.96745 1.74828 1.16821 0.93197 1.33445 1.84511 1.34438 1.12712 1.71630 1.25665 0.86600 0.98993 1.05579 1.22519 0.97448 0.91642 1.13750 1.20722 0.88848 0.96783 0.99005 1.23016 0.99995 0.95821 0.97710 1.22744 0.97959 1.00385 0.94779 1.23008 0.99894 0.97860 0.96108 0.91093 0.75422 0.90564 0.89631 0.91367 0.89274 0.89439 0.91908 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.59 12.04 21.83 0.26 -49.33 15 2 C 0.02 0.94 5.50 85.28 0.47 1.41 15 3 Si 0.99 41.47 29.56 68.60 2.03 43.50 15 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 15 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 7 C -0.48 -27.92 9.46 23.56 0.22 -27.70 15 8 H 0.09 4.82 7.68 -2.91 -0.02 4.80 15 9 C 0.12 7.32 7.00 42.37 0.30 7.62 15 10 N -0.45 -27.92 10.49 -48.87 -0.51 -28.44 15 11 O 0.01 0.71 11.09 71.67 0.79 1.51 15 12 C -0.09 -3.79 11.49 67.08 0.77 -3.02 15 13 C -0.25 -11.63 5.74 -18.18 -0.10 -11.74 15 14 C -0.03 -1.26 4.25 -11.01 -0.05 -1.31 15 15 C -0.13 -3.50 7.58 31.12 0.24 -3.26 15 16 C -0.12 -2.70 8.08 31.12 0.25 -2.45 15 17 C -0.13 -3.81 7.63 31.12 0.24 -3.57 15 18 H 0.28 15.34 8.29 -92.70 -0.77 14.58 15 19 H 0.23 6.90 7.71 -2.92 -0.02 6.88 15 20 H 0.08 2.97 7.97 -2.39 -0.02 2.95 15 21 H 0.09 2.19 7.26 -2.39 -0.02 2.17 15 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.08 2.25 8.04 -2.39 -0.02 2.23 15 Total: -1.00 -71.40 230.75 6.08 -65.32 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.17 Total: 11.45 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.33 Total: -44.01 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -0.25 Total: -77.77 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: 0.79 Total: 1.51 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -71.40 6.08 -65.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209719.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.872 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds