Wall clock time and date at job start Mon Mar 30 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31060 * 1 3 3 Si 1.86794 * 120.00240 * 2 1 4 4 H 1.48501 * 109.46911 * 239.99963 * 3 2 1 5 5 H 1.48503 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47322 * 119.99908 * 3 2 1 7 7 C 1.39679 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99205 * 180.02562 * 7 2 1 9 9 C 1.41344 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.46833 * 127.12796 * 0.02562 * 9 7 2 11 11 C 1.34070 * 106.50506 * 180.12999 * 10 9 7 12 12 N 1.37539 * 109.64598 * 0.05822 * 11 10 9 13 13 C 1.35136 * 109.76954 * 359.74256 * 12 11 10 14 14 C 1.51459 * 110.14102 * 180.24926 * 13 12 11 15 15 H 1.08991 * 110.49918 * 135.40318 * 14 13 12 16 16 O 1.42903 * 110.49756 * 257.94070 * 14 13 12 17 17 C 1.54525 * 104.26538 * 16.66776 * 14 13 12 18 18 C 1.47542 * 139.48296 * 179.69664 * 12 11 10 19 19 H 0.96999 * 119.99575 * 359.97438 * 1 2 3 20 20 H 1.07992 * 126.74775 * 0.13897 * 10 9 7 21 21 H 1.07991 * 125.17841 * 180.02562 * 11 10 9 22 22 H 0.96700 * 114.00311 * 178.13571 * 16 14 13 23 23 H 1.08993 * 110.96742 * 92.74007 * 17 14 13 24 24 H 1.09000 * 110.97188 * 216.50710 * 17 14 13 25 25 H 1.08998 * 110.21800 * 43.75762 * 18 12 11 26 26 H 1.08998 * 110.21693 * 281.83201 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6176 0.0000 4 1 3.0984 1.6962 -1.2125 5 1 1.2797 2.7464 -0.0006 6 1 3.0984 1.6963 1.2124 7 6 2.0089 -1.2097 0.0005 8 1 3.0889 -1.2097 0.0010 9 6 1.3020 -2.4337 0.0005 10 6 -0.1550 -2.6158 -0.0005 11 6 -0.3735 -3.9386 0.0028 12 7 0.8291 -4.6060 0.0072 13 6 1.8459 -3.7158 0.0010 14 6 3.1749 -4.4422 -0.0004 15 1 3.8563 -3.9898 -0.7208 16 8 3.7520 -4.4321 1.3069 17 6 2.8197 -5.8852 -0.4238 18 6 1.3447 -5.9883 0.0173 19 1 -0.4849 0.8401 0.0004 20 1 -0.9034 -1.8373 -0.0035 21 1 -1.3458 -4.4085 0.0027 22 1 4.5913 -4.9084 1.3701 23 1 2.9139 -6.0095 -1.5025 24 1 3.4370 -6.6105 0.1064 25 1 0.7838 -6.6047 -0.6852 26 1 1.2804 -6.4070 1.0216 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382599.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:37 Heat of formation + Delta-G solvation = 7.533896 kcal Electronic energy + Delta-G solvation = -11920.486128 eV Core-core repulsion = 9772.253289 eV Total energy + Delta-G solvation = -2148.232839 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.79162 -36.14160 -33.76739 -32.38603 -29.06136 -26.94583 -26.21646 -23.15240 -21.04275 -19.12893 -17.82771 -16.76772 -16.39838 -15.06388 -14.83567 -14.23908 -13.23000 -12.72800 -12.44429 -12.01953 -11.82740 -11.45150 -11.26103 -11.02158 -10.81521 -10.62739 -10.21019 -9.83934 -9.36572 -9.24293 -9.07438 -6.90290 -6.64324 -6.26541 -3.82802 3.17008 3.26348 3.30766 3.67247 4.22294 4.28721 4.50965 5.01332 5.08868 5.38072 5.47230 5.78013 5.85395 5.98621 6.21737 6.23466 6.36248 6.62224 7.44786 7.56097 7.71533 8.04327 8.33761 8.40994 8.70421 8.91436 9.10248 9.37815 9.43086 10.69226 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049107 B = 0.012590 C = 0.010417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.047658 B = 2223.401602 C = 2687.384074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.435 4.435 8 H 0.065 0.935 9 C 0.081 3.919 10 C -0.198 4.198 11 C -0.020 4.020 12 N -0.491 5.491 13 C -0.172 4.172 14 C 0.191 3.809 15 H 0.056 0.944 16 O -0.559 6.559 17 C -0.162 4.162 18 C 0.126 3.874 19 H 0.270 0.730 20 H 0.160 0.840 21 H 0.127 0.873 22 H 0.355 0.645 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -7.412 -1.074 8.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.074 3.926 10 C -0.226 4.226 11 C -0.146 4.146 12 N -0.177 5.177 13 C -0.277 4.277 14 C 0.132 3.868 15 H 0.073 0.927 16 O -0.363 6.363 17 C -0.200 4.200 18 C 0.003 3.997 19 H 0.080 0.920 20 H 0.177 0.823 21 H 0.145 0.855 22 H 0.200 0.800 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.742 -7.292 -0.947 7.848 hybrid contribution 0.793 0.285 -0.095 0.848 sum 3.534 -7.007 -1.041 7.917 Atomic orbital electron populations 1.69764 1.07021 1.27526 1.41426 1.25714 0.94784 1.00459 0.93418 0.86364 0.79718 0.81002 0.79331 1.19561 1.20760 1.19507 1.18757 0.93515 0.89445 1.45087 0.91629 1.17859 0.90936 0.88895 0.94945 1.22552 0.96616 0.92644 1.10816 1.21208 0.86409 0.92394 1.14540 1.44325 1.05947 1.04402 1.63048 1.20702 0.85632 0.90375 1.30969 1.20215 0.92133 0.90877 0.83527 0.92654 1.86845 1.39550 1.77924 1.31948 1.23238 0.96099 0.99035 1.01632 1.21801 0.94025 0.83665 1.00160 0.91973 0.82302 0.85508 0.79985 0.90364 0.90215 0.92079 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.14 10.42 55.54 0.58 -22.56 15 2 C 0.07 1.89 5.49 -17.34 -0.10 1.79 15 3 Si 0.91 20.68 29.56 -169.99 -5.02 15.66 15 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.43 -12.83 9.40 -37.86 -0.36 -13.18 15 8 H 0.07 1.89 7.84 -52.49 -0.41 1.48 15 9 C 0.08 2.37 6.09 -104.86 -0.64 1.73 15 10 C -0.20 -5.50 9.87 -37.57 -0.37 -5.87 15 11 C -0.02 -0.49 11.84 -16.46 -0.19 -0.68 15 12 N -0.49 -11.68 3.50 -109.67 -0.38 -12.07 15 13 C -0.17 -4.51 7.18 -80.38 -0.58 -5.09 15 14 C 0.19 4.00 4.28 -26.71 -0.11 3.88 15 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 16 O -0.56 -11.38 13.37 -35.23 -0.47 -11.85 15 17 C -0.16 -2.60 6.90 -25.25 -0.17 -2.77 15 18 C 0.13 2.28 7.78 -2.79 -0.02 2.26 15 19 H 0.27 6.94 8.30 -40.82 -0.34 6.60 15 20 H 0.16 4.51 6.02 -52.49 -0.32 4.19 15 21 H 0.13 2.63 8.06 -52.49 -0.42 2.21 15 22 H 0.36 4.91 9.12 45.56 0.42 5.33 15 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.08 1.01 8.11 -51.93 -0.42 0.59 15 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 LS Contribution 227.01 15.07 3.42 3.42 Total: -1.00 -33.13 227.01 -6.40 -39.53 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -1.98 Total: 5.81 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.54 Total: -17.94 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.19 Total: -34.63 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.47 Total: -11.85 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.13 -6.40 -39.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382599.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.063 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds