Wall clock time and date at job start Mon Mar 30 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31060 * 1 3 3 Si 1.86794 * 120.00240 * 2 1 4 4 H 1.48501 * 109.46911 * 239.99963 * 3 2 1 5 5 H 1.48503 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47322 * 119.99908 * 3 2 1 7 7 C 1.39679 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99205 * 180.02562 * 7 2 1 9 9 C 1.41344 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.46833 * 127.12796 * 0.02562 * 9 7 2 11 11 C 1.34070 * 106.50506 * 180.12999 * 10 9 7 12 12 N 1.37539 * 109.64598 * 0.05822 * 11 10 9 13 13 C 1.35136 * 109.76954 * 359.74256 * 12 11 10 14 14 C 1.51459 * 110.14102 * 180.24926 * 13 12 11 15 15 H 1.08991 * 110.49918 * 135.40318 * 14 13 12 16 16 O 1.42903 * 110.49756 * 257.94070 * 14 13 12 17 17 C 1.54525 * 104.26538 * 16.66776 * 14 13 12 18 18 C 1.47542 * 139.48296 * 179.69664 * 12 11 10 19 19 H 0.96999 * 119.99575 * 359.97438 * 1 2 3 20 20 H 1.07992 * 126.74775 * 0.13897 * 10 9 7 21 21 H 1.07991 * 125.17841 * 180.02562 * 11 10 9 22 22 H 0.96700 * 114.00311 * 178.13571 * 16 14 13 23 23 H 1.08993 * 110.96742 * 92.74007 * 17 14 13 24 24 H 1.09000 * 110.97188 * 216.50710 * 17 14 13 25 25 H 1.08998 * 110.21800 * 43.75762 * 18 12 11 26 26 H 1.08998 * 110.21693 * 281.83201 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6176 0.0000 4 1 3.0984 1.6962 -1.2125 5 1 1.2797 2.7464 -0.0006 6 1 3.0984 1.6963 1.2124 7 6 2.0089 -1.2097 0.0005 8 1 3.0889 -1.2097 0.0010 9 6 1.3020 -2.4337 0.0005 10 6 -0.1550 -2.6158 -0.0005 11 6 -0.3735 -3.9386 0.0028 12 7 0.8291 -4.6060 0.0072 13 6 1.8459 -3.7158 0.0010 14 6 3.1749 -4.4422 -0.0004 15 1 3.8563 -3.9898 -0.7208 16 8 3.7520 -4.4321 1.3069 17 6 2.8197 -5.8852 -0.4238 18 6 1.3447 -5.9883 0.0173 19 1 -0.4849 0.8401 0.0004 20 1 -0.9034 -1.8373 -0.0035 21 1 -1.3458 -4.4085 0.0027 22 1 4.5913 -4.9084 1.3701 23 1 2.9139 -6.0095 -1.5025 24 1 3.4370 -6.6105 0.1064 25 1 0.7838 -6.6047 -0.6852 26 1 1.2804 -6.4070 1.0216 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382599.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:37 Heat of formation + Delta-G solvation = -16.952895 kcal Electronic energy + Delta-G solvation = -11921.547955 eV Core-core repulsion = 9772.253289 eV Total energy + Delta-G solvation = -2149.294666 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.59788 -37.78846 -35.64480 -34.15202 -30.96991 -28.71512 -28.05462 -25.03492 -22.55247 -21.11721 -19.69276 -18.61450 -18.05878 -16.89913 -16.42467 -16.04021 -14.81937 -14.42400 -14.25831 -13.67375 -13.46497 -13.40020 -12.94671 -12.78956 -12.61477 -12.35556 -11.81302 -11.70491 -11.31872 -11.06705 -10.83058 -8.92799 -8.60934 -8.29044 -5.94514 1.34888 1.40091 1.52757 1.78866 2.33847 2.47370 2.59000 3.48740 3.58468 3.87945 3.93950 4.14809 4.47639 4.50782 4.62069 4.74801 4.94309 5.15712 5.35141 5.54862 5.72041 6.02027 6.32975 6.62528 6.91118 7.06798 7.16098 7.30836 7.40883 8.67854 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049107 B = 0.012590 C = 0.010417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.047658 B = 2223.401602 C = 2687.384074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.019 3.981 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.477 4.477 8 H 0.054 0.946 9 C 0.017 3.983 10 C -0.241 4.241 11 C -0.014 4.014 12 N -0.487 5.487 13 C -0.183 4.183 14 C 0.184 3.816 15 H 0.055 0.945 16 O -0.582 6.582 17 C -0.141 4.141 18 C 0.111 3.889 19 H 0.275 0.725 20 H 0.141 0.859 21 H 0.166 0.834 22 H 0.386 0.614 23 H 0.097 0.903 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -9.313 -1.246 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.010 3.990 10 C -0.270 4.270 11 C -0.142 4.142 12 N -0.171 5.171 13 C -0.290 4.290 14 C 0.125 3.875 15 H 0.073 0.927 16 O -0.390 6.390 17 C -0.179 4.179 18 C -0.009 4.009 19 H 0.085 0.915 20 H 0.158 0.842 21 H 0.183 0.817 22 H 0.235 0.765 23 H 0.115 0.885 24 H 0.142 0.858 25 H 0.113 0.887 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.842 -9.252 -1.118 10.080 hybrid contribution 0.485 0.682 -0.014 0.837 sum 4.327 -8.569 -1.132 9.666 Atomic orbital electron populations 1.69884 1.08303 1.28581 1.41948 1.26603 0.95809 1.03845 0.92712 0.85240 0.78430 0.76321 0.79410 1.18748 1.19266 1.19272 1.18967 0.93173 0.91122 1.47773 0.92731 1.18405 0.92243 0.90646 0.97732 1.22475 0.96140 0.94193 1.14182 1.21550 0.88294 0.91711 1.12676 1.44806 1.05110 1.06697 1.60470 1.21502 0.88976 0.90314 1.28192 1.20304 0.89847 0.93527 0.83819 0.92679 1.86724 1.41718 1.79110 1.31425 1.23250 0.94979 0.96276 1.03373 1.22321 0.95621 0.80755 1.02184 0.91510 0.84188 0.81726 0.76453 0.88451 0.85782 0.88695 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.13 10.42 21.79 0.23 -49.90 15 2 C 0.02 1.07 5.49 85.16 0.47 1.54 15 3 Si 0.98 43.69 29.56 68.60 2.03 45.72 15 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.48 -29.53 9.40 23.38 0.22 -29.31 15 8 H 0.05 3.31 7.84 -2.91 -0.02 3.29 15 9 C 0.02 1.01 6.09 -20.02 -0.12 0.89 15 10 C -0.24 -14.01 9.87 23.57 0.23 -13.77 15 11 C -0.01 -0.70 11.84 82.85 0.98 0.28 15 12 N -0.49 -22.36 3.50 -500.88 -1.75 -24.12 15 13 C -0.18 -9.58 7.18 42.54 0.31 -9.27 15 14 C 0.18 7.30 4.28 30.61 0.13 7.44 15 15 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 16 O -0.58 -22.40 13.37 -148.98 -1.99 -24.39 15 17 C -0.14 -3.84 6.90 31.55 0.22 -3.62 15 18 C 0.11 3.54 7.78 86.62 0.67 4.21 15 19 H 0.27 14.68 8.30 -92.71 -0.77 13.91 15 20 H 0.14 8.46 6.02 -2.91 -0.02 8.44 15 21 H 0.17 6.55 8.06 -2.92 -0.02 6.52 15 22 H 0.39 9.36 9.12 -74.06 -0.68 8.68 15 23 H 0.10 2.32 8.14 -2.39 -0.02 2.30 15 24 H 0.12 2.34 8.11 -2.39 -0.02 2.32 15 25 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 Total: -1.00 -76.14 227.01 2.13 -74.01 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.52 Total: 20.30 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 3.11 Total: -41.62 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.53 Total: -74.02 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.99 Total: -24.39 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.14 2.13 -74.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382599.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.056 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds