Wall clock time and date at job start Mon Mar 30 2020 02:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00411 * 2 1 4 4 H 1.48497 * 109.47535 * 269.99939 * 3 2 1 5 5 H 1.48504 * 109.46936 * 30.00244 * 3 2 1 6 6 H 1.48503 * 109.47306 * 149.99367 * 3 2 1 7 7 C 1.37882 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00450 * 185.51555 * 7 2 1 9 9 C 1.50704 * 119.99712 * 5.50551 * 7 2 1 10 10 H 1.08992 * 109.47348 * 334.90519 * 9 7 2 11 11 C 1.52999 * 109.47148 * 214.89999 * 9 7 2 12 12 N 1.46901 * 109.46909 * 65.30692 * 11 9 7 13 13 C 1.50705 * 109.46512 * 94.90595 * 9 7 2 14 14 C 1.38615 * 120.45094 * 34.99530 * 13 9 7 15 15 C 1.38579 * 118.39748 * 180.02562 * 14 13 9 16 16 N 1.32343 * 119.10578 * 0.02562 * 15 14 13 17 17 C 1.31774 * 120.82244 * 359.97438 * 16 15 14 18 18 N 1.31811 * 121.75351 * 359.72189 * 17 16 15 19 19 H 0.97005 * 119.99907 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47466 * 305.30661 * 11 9 7 21 21 H 1.09004 * 109.46985 * 185.30801 * 11 9 7 22 22 H 1.00898 * 110.99793 * 56.04838 * 12 11 9 23 23 H 1.00895 * 111.00013 * 179.97438 * 12 11 9 24 24 H 1.07995 * 120.80205 * 359.97438 * 14 13 9 25 25 H 1.08005 * 120.44354 * 180.02562 * 15 14 13 26 26 H 1.07998 * 119.12482 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0806 -1.1964 0.0894 9 6 1.2561 -2.4961 -0.1263 10 1 0.2354 -2.3647 0.2327 11 6 1.9564 -3.5697 0.7091 12 7 1.8711 -3.2157 2.1322 13 6 1.2293 -2.9224 -1.5716 14 6 2.3113 -2.6670 -2.3995 15 6 2.2410 -3.0771 -3.7214 16 7 1.1504 -3.6943 -4.1468 17 6 0.1407 -3.9202 -3.3307 18 7 0.1745 -3.5498 -2.0662 19 1 -0.4850 0.8401 0.0004 20 1 3.0034 -3.6350 0.4130 21 1 1.4716 -4.5320 0.5443 22 1 0.9115 -3.0860 2.4156 23 1 2.3264 -3.9100 2.7055 24 1 3.1877 -2.1599 -2.0237 25 1 3.0653 -2.8954 -4.3953 26 1 -0.7363 -4.4258 -3.7070 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260408806.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:56 Heat of formation + Delta-G solvation = 18.339902 kcal Electronic energy + Delta-G solvation = -11799.304635 eV Core-core repulsion = 9683.833131 eV Total energy + Delta-G solvation = -2115.471504 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.67353 -37.28080 -34.27985 -34.24917 -32.87939 -29.87397 -26.45676 -24.98397 -24.56225 -21.88926 -18.88727 -17.86246 -17.69308 -16.65139 -16.03424 -15.95092 -15.60440 -15.21938 -14.61833 -14.19676 -14.03692 -13.18826 -12.70573 -12.65901 -12.51607 -11.83353 -11.74871 -11.14357 -11.05862 -10.62494 -10.17833 -9.95105 -9.30552 -8.12000 -6.18692 0.24935 0.37459 1.43258 1.45524 1.55142 2.44878 3.03782 3.14479 3.43960 3.57680 3.87995 4.13005 4.41446 4.48671 4.58084 4.74929 4.83700 4.99419 5.25468 5.64059 5.72969 5.79458 6.16419 6.36653 6.48983 6.85801 6.94091 7.38225 7.46996 8.97272 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.014857 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.021212 B = 1884.224171 C = 2345.029589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.071 3.929 10 H 0.041 0.959 11 C 0.096 3.904 12 N -0.837 5.837 13 C 0.193 3.807 14 C -0.216 4.216 15 C 0.132 3.868 16 N -0.550 5.550 17 C 0.270 3.730 18 N -0.558 5.558 19 H 0.258 0.742 20 H 0.062 0.938 21 H 0.003 0.997 22 H 0.337 0.663 23 H 0.343 0.657 24 H 0.152 0.848 25 H 0.199 0.801 26 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 -5.600 -2.963 7.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.081 0.919 9 C 0.051 3.949 10 H 0.060 0.940 11 C -0.036 4.036 12 N -0.367 5.367 13 C 0.048 3.952 14 C -0.238 4.238 15 C -0.032 4.032 16 N -0.266 5.266 17 C -0.018 4.018 18 N -0.273 5.273 19 H 0.067 0.933 20 H 0.081 0.919 21 H 0.021 0.979 22 H 0.150 0.850 23 H 0.156 0.844 24 H 0.170 0.830 25 H 0.215 0.785 26 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.116 -5.309 -3.502 7.576 hybrid contribution 0.118 0.594 0.465 0.763 sum 4.234 -4.715 -3.037 7.028 Atomic orbital electron populations 1.70085 1.07516 1.27131 1.51653 1.25740 0.95424 1.02620 0.94689 0.85644 0.79071 0.79558 0.77952 1.20455 1.21712 1.18564 1.20968 0.93236 0.89726 1.48255 0.91927 1.17921 0.98212 0.93755 0.84999 0.94045 1.21525 0.99214 0.93670 0.89152 1.58406 1.22349 1.52883 1.03044 1.22915 0.87387 0.85299 0.99581 1.22910 1.02151 1.02825 0.95933 1.23691 0.95756 0.89904 0.93803 1.68378 1.02434 1.16583 1.39162 1.25375 0.97098 0.93736 0.85587 1.68349 1.28556 1.13901 1.16518 0.93293 0.91944 0.97862 0.85047 0.84445 0.82990 0.78468 0.77017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 12.77 21.45 0.27 -53.68 15 2 C 0.01 0.76 5.45 84.66 0.46 1.22 15 3 Si 0.95 42.94 29.54 68.60 2.03 44.97 15 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 15 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.48 -24.88 6.70 25.60 0.17 -24.71 15 8 H 0.06 3.14 7.77 -2.91 -0.02 3.12 15 9 C 0.07 3.44 2.43 -12.28 -0.03 3.41 15 10 H 0.04 2.35 7.24 -2.39 -0.02 2.33 15 11 C 0.10 3.89 6.14 86.30 0.53 4.42 15 12 N -0.84 -31.25 9.35 -186.71 -1.75 -32.99 15 13 C 0.19 8.80 5.82 42.58 0.25 9.05 15 14 C -0.22 -8.49 9.26 22.44 0.21 -8.28 15 15 C 0.13 4.43 11.30 84.70 0.96 5.39 15 16 N -0.55 -19.64 10.44 -200.05 -2.09 -21.73 15 17 C 0.27 10.04 12.29 180.89 2.22 12.26 15 18 N -0.56 -24.74 10.38 -188.07 -1.95 -26.69 15 19 H 0.26 14.53 8.31 -92.70 -0.77 13.76 15 20 H 0.06 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 22 H 0.34 12.78 8.99 -89.70 -0.81 11.97 15 23 H 0.34 10.13 9.08 -89.70 -0.81 9.31 15 24 H 0.15 5.65 7.26 -2.91 -0.02 5.63 15 25 H 0.20 4.71 8.06 -2.91 -0.02 4.69 15 26 H 0.21 6.12 8.06 -2.91 -0.02 6.10 15 Total: -1.00 -63.51 234.23 0.87 -62.64 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.42 Total: 24.72 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.77 Total: 2.76 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -5.51 Total: -135.10 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.51 0.87 -62.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408806.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.980 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds