Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48507 * 109.46840 * 274.98135 * 3 2 1 5 5 H 1.48491 * 109.47377 * 34.98025 * 3 2 1 6 6 H 1.48495 * 109.47078 * 154.98459 * 3 2 1 7 7 C 1.39716 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99957 * 186.02925 * 7 2 1 9 9 C 1.41228 * 119.99963 * 6.02946 * 7 2 1 10 10 C 1.39291 * 126.40527 * 174.56746 * 9 7 2 11 11 N 1.35324 * 106.24688 * 180.02562 * 10 9 7 12 12 C 1.36684 * 108.03624 * 359.80902 * 11 10 9 13 13 N 1.29672 * 109.37033 * 0.04307 * 12 11 10 14 14 C 1.51176 * 123.06231 * 179.97438 * 12 11 10 15 15 N 1.47292 * 108.07795 * 344.16473 * 14 12 11 16 16 C 1.46963 * 111.20730 * 50.44909 * 15 14 12 17 17 C 1.46648 * 128.23791 * 180.02562 * 11 10 9 18 18 H 0.96999 * 120.00136 * 359.97438 * 1 2 3 19 19 H 1.07993 * 126.87745 * 359.96942 * 10 9 7 20 20 H 1.09002 * 109.74208 * 224.52270 * 14 12 11 21 21 H 1.09001 * 109.78591 * 103.83341 * 14 12 11 22 22 H 1.00908 * 111.00107 * 286.34512 * 15 14 12 23 23 H 1.08997 * 109.44146 * 168.73223 * 16 15 14 24 24 H 1.08995 * 109.40751 * 48.82872 * 16 15 14 25 25 H 1.09003 * 109.71227 * 283.02834 * 17 11 10 26 26 H 1.08998 * 109.71065 * 43.61576 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.3864 2.1071 -1.3949 5 1 1.4983 2.6200 0.8026 6 1 3.5904 1.4120 0.5920 7 6 2.0087 -1.2100 -0.0005 8 1 3.0842 -1.2126 0.0977 9 6 1.3084 -2.4296 -0.1296 10 6 1.8720 -3.6975 -0.2523 11 7 0.8371 -4.5640 -0.3493 12 6 -0.3239 -3.8457 -0.2832 13 7 -0.0437 -2.5865 -0.1518 14 6 -1.6930 -4.4823 -0.3593 15 7 -1.5330 -5.8492 -0.8843 16 6 -0.4984 -6.5851 -0.1442 17 6 0.8850 -6.0224 -0.4954 18 1 -0.4850 0.8400 0.0004 19 1 2.9241 -3.9403 -0.2679 20 1 -2.3314 -3.9038 -1.0272 21 1 -2.1384 -4.5195 0.6348 22 1 -1.3300 -5.8355 -1.8726 23 1 -0.5400 -7.6401 -0.4148 24 1 -0.6734 -6.4780 0.9263 25 1 1.1378 -6.2807 -1.5238 26 1 1.6328 -6.4353 0.1816 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460891.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = 38.219191 kcal Electronic energy + Delta-G solvation = -11890.673082 eV Core-core repulsion = 9776.063608 eV Total energy + Delta-G solvation = -2114.609474 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.21513 -37.81846 -35.12302 -33.89860 -30.90010 -29.52417 -27.57756 -24.87012 -23.60976 -21.69124 -20.14056 -18.68892 -17.34455 -16.93973 -16.36354 -16.01069 -15.46785 -14.77337 -14.63641 -14.12456 -13.86336 -13.21141 -12.90056 -12.74174 -12.66495 -12.40793 -12.19323 -11.77615 -11.08153 -10.09994 -9.87475 -9.70846 -8.93393 -8.23814 -6.09371 1.32250 1.40607 1.55440 1.64814 2.29159 2.38639 2.60166 3.22303 3.65911 3.68803 3.90290 4.05959 4.24787 4.48735 4.53854 4.72867 4.80776 4.91146 5.22314 5.45616 5.71692 5.85310 5.94514 6.24461 6.38434 6.87474 7.10291 7.27384 8.07055 8.73066 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.081361 B = 0.010244 C = 0.009243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.063566 B = 2732.661298 C = 3028.609872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.024 3.976 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.143 3.857 10 C -0.222 4.222 11 N -0.468 5.468 12 C 0.116 3.884 13 N -0.500 5.500 14 C 0.160 3.840 15 N -0.669 5.669 16 C 0.052 3.948 17 C 0.067 3.933 18 H 0.269 0.731 19 H 0.157 0.843 20 H 0.095 0.905 21 H 0.093 0.907 22 H 0.350 0.650 23 H 0.135 0.865 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -10.431 -1.488 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.018 3.982 10 C -0.350 4.350 11 N -0.159 5.159 12 C -0.147 4.147 13 N -0.224 5.224 14 C 0.028 3.972 15 N -0.296 5.296 16 C -0.078 4.078 17 C -0.056 4.056 18 H 0.079 0.921 19 H 0.175 0.825 20 H 0.114 0.886 21 H 0.111 0.889 22 H 0.168 0.832 23 H 0.153 0.847 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.051 -10.130 -1.064 10.390 hybrid contribution 2.063 0.768 -0.333 2.226 sum 0.012 -9.362 -1.397 9.466 Atomic orbital electron populations 1.70246 1.08444 1.28008 1.37705 1.26714 0.95687 1.03928 0.92695 0.85192 0.78870 0.76612 0.78799 1.19278 1.19707 1.18240 1.18826 0.93937 0.90060 1.50438 0.90757 1.19079 0.88231 0.92741 0.98117 1.22423 0.92606 0.90304 1.29639 1.44919 1.05670 1.07274 1.57989 1.25350 0.91939 0.88730 1.08723 1.70783 1.15720 1.14329 1.21522 1.20557 0.86968 0.87304 1.02372 1.60906 1.46846 1.13239 1.08651 1.22504 0.85622 1.00005 0.99646 1.22825 1.02316 0.77276 1.03192 0.92105 0.82520 0.88638 0.88906 0.83188 0.84740 0.90752 0.89813 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.86 11.96 21.79 0.26 -49.60 15 2 C 0.02 1.37 5.49 85.17 0.47 1.83 15 3 Si 0.98 43.41 29.56 68.60 2.03 45.44 15 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.50 -30.41 9.37 23.36 0.22 -30.19 15 8 H 0.07 4.30 7.85 -2.91 -0.02 4.28 15 9 C 0.14 8.68 6.69 39.46 0.26 8.95 15 10 C -0.22 -11.48 11.73 84.41 0.99 -10.49 15 11 N -0.47 -20.40 3.14 -508.98 -1.60 -21.99 15 12 C 0.12 5.55 7.75 137.99 1.07 6.62 15 13 N -0.50 -29.83 9.51 -178.80 -1.70 -31.53 15 14 C 0.16 5.65 6.98 85.63 0.60 6.25 15 15 N -0.67 -17.70 6.91 -515.25 -3.56 -21.26 15 16 C 0.05 1.19 6.58 86.43 0.57 1.76 15 17 C 0.07 1.92 7.13 86.49 0.62 2.54 15 18 H 0.27 15.03 8.30 -92.71 -0.77 14.26 15 19 H 0.16 7.35 8.06 -2.91 -0.02 7.32 15 20 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 21 H 0.09 3.17 8.14 -2.39 -0.02 3.15 15 22 H 0.35 8.65 8.78 -89.69 -0.79 7.87 15 23 H 0.13 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.07 1.84 8.07 -2.39 -0.02 1.83 15 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 Total: -1.00 -75.52 225.89 0.62 -74.89 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.40 Total: 16.78 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.79 Total: -12.73 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.60 Total: -124.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.52 0.62 -74.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460891.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.111 kcal (2) G-P(sol) polarization free energy of solvation -75.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds