Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38597 * 120.79668 * 79.71737 * 13 10 9 15 15 N 1.32338 * 119.10277 * 179.72608 * 14 13 10 16 16 C 1.31805 * 120.81467 * 0.56620 * 15 14 13 17 17 N 1.31794 * 121.75527 * 359.70509 * 16 15 14 18 18 C 1.32336 * 120.81807 * 0.02562 * 17 16 15 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 23 23 H 1.00904 * 110.99944 * 63.94834 * 12 10 9 24 24 H 1.07996 * 120.45312 * 0.02562 * 14 13 10 25 25 H 1.08001 * 119.11789 * 179.73235 * 16 15 14 26 26 H 1.08000 * 120.44555 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 0.8815 -5.5366 -0.9781 15 7 0.2370 -6.6832 -0.8324 16 6 0.1661 -7.2731 0.3442 17 7 0.7331 -6.7550 1.4152 18 6 1.3990 -5.6135 1.3447 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.3959 -3.7518 -2.0507 23 1 3.5700 -2.8193 -1.3310 24 1 0.9322 -5.0562 -1.9440 25 1 -0.3707 -8.2061 0.4328 26 1 1.8617 -5.1946 2.2261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498117.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 13.305128 kcal Electronic energy + Delta-G solvation = -11521.023552 eV Core-core repulsion = 9405.333723 eV Total energy + Delta-G solvation = -2115.689828 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.94618 -37.65822 -34.68750 -34.59361 -32.06670 -29.96355 -26.83947 -25.47700 -24.61077 -21.71067 -18.98076 -18.53048 -18.28900 -16.64145 -16.49678 -15.72659 -15.21419 -14.70598 -14.47595 -14.46001 -14.17865 -13.88434 -12.90560 -12.79727 -12.34276 -12.05835 -11.83084 -11.74906 -11.18645 -10.62597 -10.38382 -10.19690 -9.42018 -8.22808 -6.34866 0.00962 0.10645 1.42520 1.43572 1.51317 2.39159 2.85046 3.11651 3.26547 3.29920 3.70832 3.74707 4.00951 4.17572 4.54273 4.67528 4.80555 5.00516 5.33843 5.45633 5.53255 5.72819 5.97522 6.12874 6.32803 6.67605 6.81636 7.10757 7.36003 8.88244 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.067167 B = 0.008591 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.769861 B = 3258.540504 C = 3341.528676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.009 3.991 10 C 0.149 3.851 11 H 0.087 0.913 12 N -0.829 5.829 13 C -0.165 4.165 14 C 0.147 3.853 15 N -0.533 5.533 16 C 0.269 3.731 17 N -0.530 5.530 18 C 0.140 3.860 19 H 0.262 0.738 20 H -0.012 1.012 21 H -0.006 1.006 22 H 0.335 0.665 23 H 0.351 0.649 24 H 0.171 0.829 25 H 0.226 0.774 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -8.332 -0.358 9.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.029 4.029 10 C 0.036 3.964 11 H 0.105 0.895 12 N -0.358 5.358 13 C -0.170 4.170 14 C -0.019 4.019 15 N -0.247 5.247 16 C -0.019 4.019 17 N -0.244 5.244 18 C -0.025 4.025 19 H 0.071 0.929 20 H 0.006 0.994 21 H 0.013 0.987 22 H 0.147 0.853 23 H 0.165 0.835 24 H 0.188 0.812 25 H 0.242 0.758 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.299 -9.758 0.003 10.301 hybrid contribution -0.184 2.739 -0.254 2.757 sum 3.116 -7.019 -0.251 7.684 Atomic orbital electron populations 1.70100 1.07976 1.27817 1.51418 1.25925 0.95549 1.03306 0.94672 0.85523 0.78160 0.78207 0.79293 1.18853 1.21714 1.19253 1.21518 0.93684 0.91389 1.50733 0.91087 1.19697 0.94572 0.93448 0.95221 1.20126 0.93447 0.88355 0.94440 0.89539 1.59258 1.27385 1.45959 1.03193 1.21831 1.00174 0.98802 0.96160 1.23149 0.89096 0.90167 0.99463 1.68446 1.18004 1.10231 1.27987 1.25561 0.93651 0.99748 0.82929 1.68457 1.10121 1.12229 1.33576 1.23417 0.92140 0.89476 0.97514 0.92904 0.99381 0.98745 0.85274 0.83517 0.81227 0.75801 0.80005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.60 13.29 21.45 0.28 -54.32 15 2 C 0.00 0.21 5.46 84.66 0.46 0.67 15 3 Si 0.96 41.83 29.54 68.60 2.03 43.86 15 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 7 C -0.54 -27.41 8.55 25.60 0.22 -27.19 15 8 H 0.07 3.38 7.14 -2.91 -0.02 3.36 15 9 C 0.01 0.44 4.60 29.85 0.14 0.58 15 10 C 0.15 5.52 3.02 44.17 0.13 5.65 15 11 H 0.09 3.14 8.04 -2.38 -0.02 3.12 15 12 N -0.83 -27.44 9.04 -171.79 -1.55 -28.99 15 13 C -0.17 -5.63 4.98 -19.69 -0.10 -5.73 15 14 C 0.15 4.84 10.58 84.70 0.90 5.73 15 15 N -0.53 -16.89 10.44 -200.04 -2.09 -18.98 15 16 C 0.27 7.63 12.29 180.88 2.22 9.85 15 17 N -0.53 -16.38 10.44 -200.04 -2.09 -18.46 15 18 C 0.14 4.45 10.97 84.70 0.93 5.38 15 19 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 20 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 21 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 15 22 H 0.34 10.54 7.45 -89.70 -0.67 9.87 15 23 H 0.35 11.76 7.90 -89.69 -0.71 11.05 15 24 H 0.17 5.11 6.79 -2.91 -0.02 5.10 15 25 H 0.23 4.42 8.06 -2.91 -0.02 4.40 15 26 H 0.18 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -61.30 232.54 1.31 -59.99 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.17 Total: 21.95 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.90 Total: -5.05 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.44 Total: -120.75 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -61.30 1.31 -59.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498117.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.296 kcal (2) G-P(sol) polarization free energy of solvation -61.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds