Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38571 * 120.25849 * 2 1 4 4 N 1.31471 * 121.08125 * 180.02562 * 3 2 1 5 5 C 1.33699 * 121.65634 * 0.02562 * 4 3 2 6 6 C 1.41440 * 119.80813 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00516 * 180.02562 * 6 5 4 8 8 C 1.40023 * 119.99987 * 359.97438 * 6 5 4 9 9 N 1.30754 * 119.99480 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00166 * 180.27523 * 8 6 5 11 11 H 1.48504 * 109.46882 * 179.72811 * 10 8 6 12 12 H 1.48498 * 109.47241 * 299.72711 * 10 8 6 13 13 H 1.48495 * 109.47052 * 59.72936 * 10 8 6 14 14 C 1.40428 * 120.39147 * 0.25208 * 5 4 3 15 15 C 1.50694 * 120.54758 * 179.74528 * 14 5 4 16 16 C 1.38849 * 118.90447 * 359.49563 * 14 5 4 17 17 O 1.35764 * 120.76209 * 180.22024 * 16 14 5 18 18 H 1.08999 * 109.46828 * 89.99514 * 1 2 3 19 19 H 1.08993 * 109.47853 * 210.00184 * 1 2 3 20 20 H 1.09000 * 109.46683 * 330.00591 * 1 2 3 21 21 H 1.07994 * 119.45824 * 359.97438 * 3 2 1 22 22 H 0.97005 * 119.99639 * 179.97438 * 9 8 6 23 23 H 1.09004 * 109.47163 * 89.99859 * 15 14 5 24 24 H 1.09006 * 109.47095 * 209.99905 * 15 14 5 25 25 H 1.08999 * 109.47113 * 329.99612 * 15 14 5 26 26 H 0.96693 * 113.99955 * 270.28554 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1969 0.0000 4 7 3.5199 1.2158 -0.0005 5 6 4.2378 0.0879 -0.0015 6 6 5.6507 0.1538 -0.0026 7 1 6.2338 -0.7552 -0.0039 8 6 6.2935 1.3978 -0.0031 9 7 5.5876 2.4984 -0.0021 10 14 8.1594 1.4849 -0.0123 11 1 8.5885 2.9066 -0.0180 12 1 8.6924 0.8118 1.1994 13 1 8.6807 0.8057 -1.2255 14 6 3.5975 -1.1618 -0.0075 15 6 4.4032 -2.4353 -0.0144 16 6 2.2096 -1.2049 -0.0015 17 8 1.5517 -2.3925 -0.0024 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8901 0.5138 21 1 1.6607 2.1295 -0.0004 22 1 6.0329 3.3602 -0.0021 23 1 4.5982 -2.7475 1.0116 24 1 3.8450 -3.2156 -0.5319 25 1 5.3492 -2.2638 -0.5281 26 1 1.3611 -2.7358 -0.8860 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535933.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = -25.254349 kcal Electronic energy + Delta-G solvation = -11833.925976 eV Core-core repulsion = 9684.271332 eV Total energy + Delta-G solvation = -2149.654644 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.86327 -36.18021 -33.71707 -32.05845 -30.67967 -27.53086 -25.95545 -24.11379 -21.28704 -19.78887 -18.17000 -16.42834 -15.68419 -14.80745 -14.33866 -13.20795 -13.09605 -12.64151 -12.31051 -12.25855 -11.67592 -11.56255 -11.41182 -11.27391 -11.11296 -10.94354 -10.41415 -10.27981 -9.29887 -9.23423 -7.76850 -7.60381 -7.44868 -6.44534 -4.52964 2.68878 2.78413 3.06439 3.08493 3.15445 3.91732 4.66480 5.18114 5.76435 5.98091 6.09863 6.16156 6.34971 6.41112 6.58402 6.60584 6.69344 6.81129 6.88978 7.14870 7.29861 7.54367 7.62345 7.83349 8.18926 8.44969 8.71688 8.89449 10.07639 10.28109 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.053423 B = 0.012340 C = 0.010108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.996468 B = 2268.412023 C = 2769.422653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.312 4.312 3 C 0.137 3.863 4 N -0.486 5.486 5 C 0.264 3.736 6 C -0.427 4.427 7 H 0.088 0.912 8 C 0.068 3.932 9 N -0.714 5.714 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.264 1.264 13 H -0.264 1.264 14 C -0.267 4.267 15 C -0.072 4.072 16 C 0.156 3.844 17 O -0.504 6.504 18 H 0.039 0.961 19 H 0.049 0.951 20 H 0.046 0.954 21 H 0.121 0.879 22 H 0.274 0.726 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -3.214 -1.590 3.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.318 4.318 3 C -0.030 4.030 4 N -0.197 5.197 5 C 0.139 3.861 6 C -0.458 4.458 7 H 0.106 0.894 8 C -0.158 4.158 9 N -0.335 5.335 10 Si 0.732 3.268 11 H -0.202 1.202 12 H -0.189 1.189 13 H -0.189 1.189 14 C -0.272 4.272 15 C -0.129 4.129 16 C 0.107 3.893 17 O -0.312 6.312 18 H 0.057 0.943 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.138 0.862 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.202 -2.124 -0.972 2.627 hybrid contribution 0.216 -0.746 -0.492 0.919 sum -0.987 -2.870 -1.464 3.369 Atomic orbital electron populations 1.20157 0.92932 1.00555 0.99476 1.20442 0.95514 0.93832 1.21993 1.22357 0.91685 0.94776 0.94158 1.68749 1.04444 1.29169 1.17386 1.18366 0.93737 0.85397 0.88585 1.19674 0.90261 0.93434 1.42437 0.89377 1.26108 1.00553 0.95524 0.93608 1.70139 1.36878 0.98302 1.28138 0.86379 0.82284 0.78189 0.79948 1.20166 1.18867 1.18874 1.20866 0.92430 0.96666 1.17278 1.20183 0.98703 0.94046 1.00003 1.18128 0.89292 0.83435 0.98481 1.84668 1.78150 1.36315 1.32107 0.94269 0.93230 0.93537 0.86188 0.91497 0.93720 0.94302 0.92293 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 9.83 36.01 0.35 -1.01 15 2 C -0.31 -7.17 5.93 -104.04 -0.62 -7.79 15 3 C 0.14 3.38 10.85 -17.58 -0.19 3.19 15 4 N -0.49 -13.57 7.86 -11.19 -0.09 -13.66 15 5 C 0.26 7.27 6.55 -85.01 -0.56 6.71 15 6 C -0.43 -11.38 8.68 -37.69 -0.33 -11.71 15 7 H 0.09 2.17 6.02 -52.49 -0.32 1.86 15 8 C 0.07 1.72 5.50 -17.34 -0.10 1.62 15 9 N -0.71 -19.02 11.46 55.55 0.64 -18.38 15 10 Si 0.91 18.47 29.56 -169.99 -5.02 13.44 15 11 H -0.28 -5.49 7.11 56.52 0.40 -5.08 15 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 13 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 14 C -0.27 -6.66 5.97 -103.57 -0.62 -7.28 15 15 C -0.07 -1.52 9.31 36.00 0.34 -1.19 15 16 C 0.16 3.65 6.70 -38.89 -0.26 3.39 15 17 O -0.50 -10.03 11.84 -19.00 -0.22 -10.25 15 18 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 19 H 0.05 0.89 7.60 -51.93 -0.39 0.49 15 20 H 0.05 0.79 8.09 -51.93 -0.42 0.37 15 21 H 0.12 2.65 8.06 -52.49 -0.42 2.23 15 22 H 0.27 6.61 8.29 -40.82 -0.34 6.27 15 23 H 0.04 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.04 0.72 7.62 -51.93 -0.40 0.33 15 25 H 0.06 1.22 6.35 -51.93 -0.33 0.89 15 26 H 0.37 5.61 9.06 45.56 0.41 6.02 15 LS Contribution 228.73 15.07 3.45 3.45 Total: -1.00 -30.04 228.73 -5.08 -35.12 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.85 Total: 4.34 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.98 Total: -14.05 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.55 Total: -32.04 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.22 Total: -10.25 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.04 -5.08 -35.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535933.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.865 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds