Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38571 * 120.25849 * 2 1 4 4 N 1.31471 * 121.08125 * 180.02562 * 3 2 1 5 5 C 1.33699 * 121.65634 * 0.02562 * 4 3 2 6 6 C 1.41440 * 119.80813 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00516 * 180.02562 * 6 5 4 8 8 C 1.40023 * 119.99987 * 359.97438 * 6 5 4 9 9 N 1.30754 * 119.99480 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00166 * 180.27523 * 8 6 5 11 11 H 1.48504 * 109.46882 * 179.72811 * 10 8 6 12 12 H 1.48498 * 109.47241 * 299.72711 * 10 8 6 13 13 H 1.48495 * 109.47052 * 59.72936 * 10 8 6 14 14 C 1.40428 * 120.39147 * 0.25208 * 5 4 3 15 15 C 1.50694 * 120.54758 * 179.74528 * 14 5 4 16 16 C 1.38849 * 118.90447 * 359.49563 * 14 5 4 17 17 O 1.35764 * 120.76209 * 180.22024 * 16 14 5 18 18 H 1.08999 * 109.46828 * 89.99514 * 1 2 3 19 19 H 1.08993 * 109.47853 * 210.00184 * 1 2 3 20 20 H 1.09000 * 109.46683 * 330.00591 * 1 2 3 21 21 H 1.07994 * 119.45824 * 359.97438 * 3 2 1 22 22 H 0.97005 * 119.99639 * 179.97438 * 9 8 6 23 23 H 1.09004 * 109.47163 * 89.99859 * 15 14 5 24 24 H 1.09006 * 109.47095 * 209.99905 * 15 14 5 25 25 H 1.08999 * 109.47113 * 329.99612 * 15 14 5 26 26 H 0.96693 * 113.99955 * 270.28554 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1969 0.0000 4 7 3.5199 1.2158 -0.0005 5 6 4.2378 0.0879 -0.0015 6 6 5.6507 0.1538 -0.0026 7 1 6.2338 -0.7552 -0.0039 8 6 6.2935 1.3978 -0.0031 9 7 5.5876 2.4984 -0.0021 10 14 8.1594 1.4849 -0.0123 11 1 8.5885 2.9066 -0.0180 12 1 8.6924 0.8118 1.1994 13 1 8.6807 0.8057 -1.2255 14 6 3.5975 -1.1618 -0.0075 15 6 4.4032 -2.4353 -0.0144 16 6 2.2096 -1.2049 -0.0015 17 8 1.5517 -2.3925 -0.0024 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8901 0.5138 21 1 1.6607 2.1295 -0.0004 22 1 6.0329 3.3602 -0.0021 23 1 4.5982 -2.7475 1.0116 24 1 3.8450 -3.2156 -0.5319 25 1 5.3492 -2.2638 -0.5281 26 1 1.3611 -2.7358 -0.8860 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535933.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = -45.951509 kcal Electronic energy + Delta-G solvation = -11834.823473 eV Core-core repulsion = 9684.271332 eV Total energy + Delta-G solvation = -2150.552140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.67656 -37.91674 -35.56036 -33.85668 -32.45328 -29.35748 -27.67948 -25.92496 -23.14146 -21.58203 -19.96407 -18.26858 -17.44031 -16.64088 -16.03014 -14.95148 -14.82509 -14.35603 -14.04610 -13.85332 -13.36822 -13.26048 -13.12291 -12.85486 -12.78163 -12.63290 -12.14386 -11.98877 -11.11698 -10.97725 -9.61872 -9.50118 -9.34412 -8.30816 -6.48097 0.83835 0.95440 1.41047 1.53528 1.54190 2.22794 2.80184 3.52020 3.85230 4.20435 4.41337 4.56344 4.70467 4.87688 4.92273 4.96437 5.06638 5.09965 5.18761 5.34732 5.55658 5.73206 5.84074 6.03628 6.27137 6.66264 6.91476 7.09004 8.17038 8.44694 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.053423 B = 0.012340 C = 0.010108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.996468 B = 2268.412023 C = 2769.422653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.309 4.309 3 C 0.113 3.887 4 N -0.524 5.524 5 C 0.229 3.771 6 C -0.462 4.462 7 H 0.097 0.903 8 C 0.022 3.978 9 N -0.757 5.757 10 Si 0.987 3.013 11 H -0.269 1.269 12 H -0.259 1.259 13 H -0.256 1.256 14 C -0.289 4.289 15 C -0.066 4.066 16 C 0.154 3.846 17 O -0.499 6.499 18 H 0.060 0.940 19 H 0.057 0.943 20 H 0.060 0.940 21 H 0.137 0.863 22 H 0.279 0.721 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -4.190 -1.817 4.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.315 4.315 3 C -0.052 4.052 4 N -0.236 5.236 5 C 0.104 3.896 6 C -0.493 4.493 7 H 0.115 0.885 8 C -0.200 4.200 9 N -0.379 5.379 10 Si 0.807 3.193 11 H -0.194 1.194 12 H -0.183 1.183 13 H -0.180 1.180 14 C -0.294 4.294 15 C -0.123 4.123 16 C 0.103 3.897 17 O -0.311 6.311 18 H 0.079 0.921 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.155 0.845 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.462 -3.122 -1.215 3.655 hybrid contribution 0.095 -0.519 -0.431 0.681 sum -1.367 -3.640 -1.646 4.223 Atomic orbital electron populations 1.20183 0.89546 1.01664 1.01159 1.20910 0.98021 0.93085 1.19470 1.22763 0.91282 0.96465 0.94678 1.68669 1.05969 1.30242 1.18769 1.18842 0.94658 0.86470 0.89633 1.20049 0.90603 0.94574 1.44042 0.88516 1.27060 1.05783 0.94650 0.92505 1.70248 1.39179 0.98999 1.29431 0.85190 0.75430 0.78486 0.80184 1.19372 1.18274 1.18028 1.21269 0.93785 0.97180 1.17174 1.20159 0.98563 0.93130 1.00426 1.18218 0.89098 0.84719 0.97627 1.84601 1.77451 1.34791 1.34214 0.92145 0.92443 0.92115 0.84523 0.91052 0.93534 0.91811 0.92400 0.74492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 9.83 71.24 0.70 -1.61 15 2 C -0.31 -13.77 5.93 -19.48 -0.12 -13.89 15 3 C 0.11 5.60 10.85 84.83 0.92 6.52 15 4 N -0.52 -29.97 7.86 -189.31 -1.49 -31.46 15 5 C 0.23 12.87 6.55 40.18 0.26 13.13 15 6 C -0.46 -25.07 8.68 23.49 0.20 -24.86 15 7 H 0.10 4.84 6.02 -2.91 -0.02 4.82 15 8 C 0.02 1.11 5.50 85.29 0.47 1.58 15 9 N -0.76 -41.37 11.46 21.84 0.25 -41.12 15 10 Si 0.99 38.05 29.56 68.60 2.03 40.07 15 11 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 12 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 13 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 14 C -0.29 -14.32 5.97 -19.19 -0.11 -14.43 15 15 C -0.07 -2.70 9.31 71.23 0.66 -2.03 15 16 C 0.15 6.95 6.70 22.72 0.15 7.10 15 17 O -0.50 -18.37 11.84 -90.91 -1.08 -19.44 15 18 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.06 1.86 7.60 -2.39 -0.02 1.85 15 20 H 0.06 1.89 8.09 -2.39 -0.02 1.87 15 21 H 0.14 6.05 8.06 -2.91 -0.02 6.03 15 22 H 0.28 13.79 8.29 -92.70 -0.77 13.02 15 23 H 0.05 1.86 8.14 -2.38 -0.02 1.84 15 24 H 0.06 2.24 7.62 -2.38 -0.02 2.22 15 25 H 0.06 2.35 6.35 -2.39 -0.02 2.34 15 26 H 0.40 10.52 9.06 -74.06 -0.67 9.85 15 Total: -1.00 -65.05 228.73 3.39 -61.67 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.53 Total: 18.78 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.14 Total: -28.50 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.24 Total: -72.58 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.08 Total: -19.44 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.07 kcal Total: -65.05 3.39 -61.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535933.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.715 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds