Wall clock time and date at job start Mon Mar 30 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48003 * 110.99841 * 2 1 4 4 C 1.54617 * 102.48194 * 265.03336 * 3 2 1 5 5 C 1.52059 * 102.72529 * 335.05350 * 4 3 2 6 6 O 1.34498 * 142.54776 * 196.26112 * 5 4 3 7 7 C 1.35015 * 109.45192 * 178.92601 * 6 5 4 8 8 C 1.39721 * 126.10772 * 180.23643 * 7 6 5 9 9 H 1.07998 * 119.99665 * 179.97438 * 8 7 6 10 10 C 1.40107 * 119.99896 * 359.97342 * 8 7 6 11 11 N 1.30827 * 119.99873 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99687 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46895 * 89.99679 * 12 10 8 14 14 H 1.48498 * 109.47035 * 209.99861 * 12 10 8 15 15 H 1.48497 * 109.47269 * 330.00038 * 12 10 8 16 16 C 1.39387 * 107.78200 * 0.22954 * 7 6 5 17 17 C 1.36341 * 108.21890 * 15.60484 * 5 4 3 18 18 H 1.09003 * 109.47032 * 60.00862 * 1 2 3 19 19 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47649 * 300.00235 * 1 2 3 21 21 H 1.09002 * 110.84044 * 23.33852 * 3 2 1 22 22 H 1.09003 * 110.84153 * 146.73341 * 3 2 1 23 23 H 1.09004 * 110.72722 * 93.26532 * 4 3 2 24 24 H 1.08993 * 110.73489 * 216.57054 * 4 3 2 25 25 H 0.97004 * 119.99708 * 180.02562 * 11 10 8 26 26 H 1.07995 * 126.70485 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 2.2411 1.6469 -1.5040 5 6 2.4283 0.2461 -2.0652 6 8 2.8890 -0.4215 -3.1380 7 6 2.7532 -1.7492 -2.9338 8 6 3.1248 -2.7613 -3.8225 9 1 2.9708 -3.7967 -3.5567 10 6 3.6971 -2.4329 -5.0585 11 7 3.8830 -1.1786 -5.3806 12 14 4.1932 -3.7860 -6.2469 13 1 3.0505 -4.1032 -7.1408 14 1 5.3476 -3.3301 -7.0621 15 1 4.5757 -5.0004 -5.4827 16 6 2.1761 -1.9299 -1.6779 17 6 1.9729 -0.6475 -1.1416 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.2651 2.0790 0.4036 22 1 2.9335 1.4386 0.5588 23 1 1.3741 2.1297 -1.9548 24 1 3.1385 2.2480 -1.6505 25 1 4.2789 -0.9513 -6.2365 26 1 1.9327 -2.8717 -1.2088 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535977.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:39 Heat of formation + Delta-G solvation = 7.390490 kcal Electronic energy + Delta-G solvation = -11894.394485 eV Core-core repulsion = 9746.155428 eV Total energy + Delta-G solvation = -2148.239057 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.67148 -39.22059 -35.59823 -32.60380 -31.81850 -30.15330 -26.57171 -26.45058 -22.84875 -21.31748 -21.04315 -18.96746 -17.20520 -16.85250 -16.59806 -15.96091 -15.35682 -14.97905 -14.50351 -13.88776 -13.63752 -13.42334 -13.03781 -12.94181 -12.88112 -12.57382 -12.07526 -11.95607 -11.79387 -11.34284 -10.55160 -9.53913 -8.81000 -8.70116 -6.50656 1.13928 1.36966 1.54770 1.59022 2.01621 2.15815 2.34763 3.11377 3.16266 3.96867 4.15756 4.34033 4.52584 4.59415 4.63744 4.76526 4.90337 4.93199 5.03315 5.17601 5.27291 5.49033 5.63367 5.95885 6.16714 6.33639 6.61853 6.74115 7.18920 8.21918 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.080208 B = 0.010189 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.009592 B = 2747.478360 C = 2991.731594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.489 5.489 3 C 0.061 3.939 4 C -0.031 4.031 5 C -0.261 4.261 6 O -0.168 6.168 7 C 0.187 3.813 8 C -0.476 4.476 9 H 0.115 0.885 10 C 0.020 3.980 11 N -0.819 5.819 12 Si 1.011 2.989 13 H -0.256 1.256 14 H -0.264 1.264 15 H -0.249 1.249 16 C -0.398 4.398 17 C 0.020 3.980 18 H 0.019 0.981 19 H 0.054 0.946 20 H 0.105 0.895 21 H 0.124 0.876 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.295 0.705 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 2.946 3.427 5.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.210 5.210 3 C -0.066 4.066 4 C -0.069 4.069 5 C -0.311 4.311 6 O -0.065 6.065 7 C 0.134 3.866 8 C -0.505 4.505 9 H 0.133 0.867 10 C -0.196 4.196 11 N -0.445 5.445 12 Si 0.829 3.171 13 H -0.180 1.180 14 H -0.188 1.188 15 H -0.172 1.172 16 C -0.420 4.420 17 C -0.076 4.076 18 H 0.038 0.962 19 H 0.073 0.927 20 H 0.124 0.876 21 H 0.142 0.858 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.438 3.035 3.548 5.267 hybrid contribution -0.026 -0.255 -1.165 1.193 sum -2.464 2.780 2.383 4.413 Atomic orbital electron populations 1.22466 0.85537 1.02028 1.01360 1.60201 1.08970 1.14842 1.36942 1.23358 1.02238 0.87745 0.93222 1.21108 1.02222 0.87852 0.95746 1.23998 1.18646 0.98228 0.90263 1.84159 1.67364 1.18128 1.36884 1.20052 0.92950 0.80545 0.93050 1.19188 1.37985 0.93253 1.00067 0.86695 1.27282 0.92493 0.99637 1.00231 1.69879 1.30853 1.20889 1.22871 0.84774 0.78814 0.76972 0.76554 1.18034 1.18792 1.17219 1.20654 1.26780 0.95119 0.99442 1.19748 1.02756 0.93814 0.91289 0.96184 0.92697 0.87636 0.85806 0.89073 0.90508 0.89931 0.89478 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.30 127.69 1.19 2.26 15 2 N -0.49 -19.85 5.37 -714.01 -3.83 -23.68 15 3 C 0.06 1.94 7.02 86.64 0.61 2.55 15 4 C -0.03 -1.20 7.01 30.83 0.22 -0.98 15 5 C -0.26 -13.97 8.34 25.68 0.21 -13.76 15 6 O -0.17 -10.45 8.96 -11.53 -0.10 -10.56 15 7 C 0.19 11.37 6.78 22.91 0.16 11.53 15 8 C -0.48 -27.03 9.31 23.08 0.21 -26.82 15 9 H 0.12 6.02 7.85 -2.91 -0.02 5.99 15 10 C 0.02 1.05 5.50 85.30 0.47 1.52 15 11 N -0.82 -45.56 12.00 21.86 0.26 -45.30 15 12 Si 1.01 38.05 29.56 68.60 2.03 40.08 15 13 H -0.26 -9.15 7.11 99.48 0.71 -8.45 15 14 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 15 H -0.25 -8.90 7.11 99.48 0.71 -8.19 15 16 C -0.40 -22.76 10.95 23.09 0.25 -22.51 15 17 C 0.02 1.03 6.37 37.84 0.24 1.27 15 18 H 0.02 0.67 8.14 -2.39 -0.02 0.65 15 19 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 20 H 0.11 2.54 8.11 -2.39 -0.02 2.52 15 21 H 0.12 2.79 7.76 -2.39 -0.02 2.77 15 22 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.29 14.53 8.30 -92.71 -0.77 13.76 15 26 H 0.12 6.34 8.06 -2.91 -0.02 6.31 15 Total: -1.00 -70.61 228.57 3.08 -67.52 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.17 Total: 16.88 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 3.56 Total: -44.94 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -3.57 Total: -68.98 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.10 Total: -10.56 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -70.61 3.08 -67.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535977.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.911 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds