Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99729 * 2 1 4 4 H 1.48497 * 109.47235 * 264.74604 * 3 2 1 5 5 H 1.48496 * 109.47505 * 24.75267 * 3 2 1 6 6 H 1.48506 * 109.46833 * 144.74953 * 3 2 1 7 7 C 1.37872 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 356.91122 * 7 2 1 9 9 C 1.50704 * 119.99825 * 176.91909 * 7 2 1 10 10 H 1.09001 * 109.47100 * 359.75247 * 9 7 2 11 11 C 1.52994 * 109.47204 * 239.75255 * 9 7 2 12 12 N 1.46905 * 109.47118 * 64.42682 * 11 9 7 13 13 C 1.50701 * 109.47420 * 119.74802 * 9 7 2 14 14 C 1.38601 * 120.79226 * 59.72436 * 13 9 7 15 15 N 1.32340 * 119.09628 * 179.71918 * 14 13 9 16 16 C 1.31797 * 120.81993 * 0.56637 * 15 14 13 17 17 N 1.31794 * 121.75259 * 359.70351 * 16 15 14 18 18 C 1.32331 * 120.81975 * 0.02562 * 17 16 15 19 19 H 0.96993 * 119.99668 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47327 * 304.42830 * 11 9 7 21 21 H 1.08994 * 109.47440 * 184.42545 * 11 9 7 22 22 H 1.00898 * 111.00357 * 62.87597 * 12 11 9 23 23 H 1.00901 * 110.99731 * 186.83667 * 12 11 9 24 24 H 1.07992 * 120.45179 * 359.97438 * 14 13 9 25 25 H 1.07998 * 119.11809 * 179.68563 * 16 15 14 26 26 H 1.08000 * 120.44307 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6077 1.9824 -1.3941 5 1 1.3956 2.6822 0.5862 6 1 3.4869 1.4748 0.8081 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1287 0.0494 9 6 3.5099 -1.1950 -0.0707 10 1 3.8721 -0.1681 -0.1192 11 6 3.9618 -1.9546 -1.3195 12 7 3.5055 -1.2400 -2.5192 13 6 4.0696 -1.8675 1.1564 14 6 3.7528 -3.1843 1.4507 15 7 4.2676 -3.7434 2.5340 16 6 5.0627 -3.0608 3.3334 17 7 5.3813 -1.8056 3.0881 18 6 4.9086 -1.1823 2.0208 19 1 -0.4849 0.8400 0.0004 20 1 3.5346 -2.9573 -1.3094 21 1 5.0495 -2.0233 -1.3293 22 1 3.9250 -0.3242 -2.5761 23 1 3.6935 -1.7764 -3.3529 24 1 3.0980 -3.7477 0.8025 25 1 5.4635 -3.5427 4.2128 26 1 5.1733 -0.1535 1.8260 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573726.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = 20.609800 kcal Electronic energy + Delta-G solvation = -11819.488785 eV Core-core repulsion = 9704.115711 eV Total energy + Delta-G solvation = -2115.373074 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.84076 -37.42024 -34.52824 -34.22367 -33.35110 -29.73874 -26.20286 -25.54718 -24.54062 -21.50717 -19.37019 -18.49094 -17.90950 -16.73501 -16.59431 -15.56262 -15.25001 -14.86047 -14.52267 -14.39119 -14.23922 -14.06137 -12.92571 -12.74821 -12.42656 -11.77405 -11.66707 -11.56585 -11.24302 -10.63851 -10.10678 -10.05986 -9.23463 -8.19178 -6.20691 0.14247 0.17223 1.38550 1.42867 1.48568 2.41905 2.92390 3.18676 3.36162 3.39126 3.80571 3.86619 4.06208 4.37125 4.52701 4.62656 4.81384 4.92183 5.01225 5.35560 5.55407 5.66856 6.07979 6.33002 6.51998 6.80419 6.87704 7.18815 7.42785 8.97858 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.035823 B = 0.014224 C = 0.012848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.429999 B = 1968.069571 C = 2178.836943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.018 3.982 3 Si 0.935 3.065 4 H -0.256 1.256 5 H -0.303 1.303 6 H -0.244 1.244 7 C -0.472 4.472 8 H 0.033 0.967 9 C 0.053 3.947 10 H 0.052 0.948 11 C 0.087 3.913 12 N -0.847 5.847 13 C -0.149 4.149 14 C 0.144 3.856 15 N -0.534 5.534 16 C 0.258 3.742 17 N -0.530 5.530 18 C 0.122 3.878 19 H 0.261 0.739 20 H 0.058 0.942 21 H 0.023 0.977 22 H 0.337 0.663 23 H 0.345 0.655 24 H 0.162 0.838 25 H 0.224 0.776 26 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 -1.593 0.145 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.181 1.181 5 H -0.230 1.230 6 H -0.168 1.168 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.033 3.967 10 H 0.070 0.930 11 C -0.044 4.044 12 N -0.377 5.377 13 C -0.154 4.154 14 C -0.022 4.022 15 N -0.247 5.247 16 C -0.029 4.029 17 N -0.244 5.244 18 C -0.043 4.043 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.149 0.851 23 H 0.159 0.841 24 H 0.179 0.821 25 H 0.240 0.760 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 11.300 -2.005 1.276 11.547 hybrid contribution 0.213 1.129 -0.991 1.517 sum 11.512 -0.877 0.285 11.549 Atomic orbital electron populations 1.70048 1.08376 1.27631 1.53259 1.25833 0.95238 1.02658 0.94159 0.85930 0.79157 0.79029 0.79827 1.18057 1.22990 1.16826 1.20756 0.89431 0.92815 1.47978 0.94845 1.18221 0.94465 0.95606 0.88452 0.92962 1.21698 0.94779 0.97296 0.90603 1.58301 1.68135 1.06789 1.04489 1.22221 0.95951 0.96298 1.00893 1.23076 0.93792 0.92660 0.92664 1.68401 1.10989 1.40098 1.05226 1.25437 0.91696 0.87392 0.98389 1.68372 1.24828 1.11720 1.19432 1.23347 0.91517 1.00482 0.88993 0.92988 0.92381 0.95909 0.85090 0.84134 0.82051 0.75992 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.41 13.96 21.45 0.30 -58.11 15 2 C 0.02 0.98 5.47 84.65 0.46 1.44 15 3 Si 0.94 41.78 27.06 68.60 1.86 43.64 15 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 15 6 H -0.24 -9.70 6.62 99.48 0.66 -9.04 15 7 C -0.47 -24.78 8.23 25.60 0.21 -24.57 15 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 15 9 C 0.05 2.18 2.15 -12.29 -0.03 2.16 15 10 H 0.05 2.10 4.44 -2.39 -0.01 2.09 15 11 C 0.09 3.07 5.92 86.30 0.51 3.58 15 12 N -0.85 -28.84 9.29 -186.73 -1.73 -30.58 15 13 C -0.15 -5.70 4.78 -19.69 -0.09 -5.79 15 14 C 0.14 5.41 10.20 84.70 0.86 6.27 15 15 N -0.53 -18.83 10.44 -200.05 -2.09 -20.91 15 16 C 0.26 8.09 12.29 180.88 2.22 10.32 15 17 N -0.53 -17.93 10.44 -200.05 -2.09 -20.02 15 18 C 0.12 4.30 10.96 84.70 0.93 5.22 15 19 H 0.26 15.22 8.31 -92.71 -0.77 14.45 15 20 H 0.06 2.09 7.66 -2.39 -0.02 2.07 15 21 H 0.02 0.70 8.14 -2.39 -0.02 0.68 15 22 H 0.34 10.55 9.06 -89.70 -0.81 9.74 15 23 H 0.35 9.50 9.08 -89.69 -0.81 8.69 15 24 H 0.16 5.99 7.74 -2.91 -0.02 5.96 15 25 H 0.22 4.96 8.06 -2.91 -0.02 4.94 15 26 H 0.17 5.38 8.01 -2.91 -0.02 5.36 15 Total: -1.00 -64.64 230.57 0.86 -63.79 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.47 Total: 23.57 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.08 Total: -1.37 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -5.61 Total: -129.63 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.86 Total: 43.64 kcal Total: -64.64 0.86 -63.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573726.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.397 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds