Wall clock time and date at job start Mon Mar 30 2020 02:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48503 * 109.47499 * 89.99486 * 3 2 1 5 5 H 1.48499 * 109.47320 * 209.99633 * 3 2 1 6 6 H 1.48506 * 109.47061 * 329.99506 * 3 2 1 7 7 C 1.37869 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00577 * 186.73168 * 7 2 1 9 9 C 1.50703 * 119.99735 * 6.73115 * 7 2 1 10 10 H 1.09002 * 109.46968 * 33.06697 * 9 7 2 11 11 C 1.53004 * 109.47271 * 153.06679 * 9 7 2 12 12 N 1.46898 * 109.47161 * 185.27842 * 11 9 7 13 13 C 1.50697 * 109.47164 * 273.06944 * 9 7 2 14 14 C 1.38600 * 120.79743 * 299.71957 * 13 9 7 15 15 N 1.32337 * 119.10020 * 179.71973 * 14 13 9 16 16 C 1.31798 * 120.81989 * 0.56785 * 15 14 13 17 17 N 1.31799 * 121.75316 * 359.70401 * 16 15 14 18 18 C 1.32330 * 120.81699 * 0.02562 * 17 16 15 19 19 H 0.96997 * 119.99892 * 174.74589 * 1 2 3 20 20 H 1.08998 * 109.47313 * 305.28190 * 11 9 7 21 21 H 1.09007 * 109.46860 * 65.27992 * 11 9 7 22 22 H 1.00898 * 110.99906 * 56.05316 * 12 11 9 23 23 H 1.00901 * 110.99868 * 180.02562 * 12 11 9 24 24 H 1.07991 * 120.44777 * 359.97438 * 14 13 9 25 25 H 1.07999 * 119.12047 * 179.72888 * 16 15 14 26 26 H 1.08006 * 120.44726 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6527 -0.7002 7 6 2.0045 -1.1939 0.0005 8 1 3.0789 -1.1972 0.1102 9 6 1.2588 -2.4947 -0.1519 10 1 0.3927 -2.3435 -0.7961 11 6 2.1827 -3.5421 -0.7767 12 7 1.4218 -4.7704 -1.0417 13 6 0.8006 -2.9726 1.2019 14 6 1.7166 -3.2447 2.2058 15 7 1.2767 -3.6573 3.3838 16 6 -0.0124 -3.8205 3.6039 17 7 -0.9116 -3.5769 2.6715 18 6 -0.5465 -3.1565 1.4710 19 1 -0.4850 -0.8365 -0.0769 20 1 2.5883 -3.1570 -1.7122 21 1 2.9998 -3.7619 -0.0896 22 1 0.6207 -4.5807 -1.6249 23 1 2.0105 -5.4784 -1.4544 24 1 2.7745 -3.1177 2.0305 25 1 -0.3408 -4.1627 4.5742 26 1 -1.2884 -2.9583 0.7115 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573731.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:29 Heat of formation + Delta-G solvation = 31.345818 kcal Electronic energy + Delta-G solvation = -11910.238305 eV Core-core repulsion = 9795.330780 eV Total energy + Delta-G solvation = -2114.907525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.10120 -35.92027 -32.89273 -32.75028 -31.12093 -27.75262 -24.07417 -23.66484 -23.08603 -20.31070 -17.23687 -16.84415 -16.47101 -15.25687 -14.25179 -13.92872 -13.81063 -13.46587 -12.86459 -12.65907 -12.51237 -11.82763 -11.63501 -10.90787 -10.25934 -10.09066 -9.93148 -9.90082 -9.18335 -8.65687 -8.38458 -8.17080 -8.06712 -6.57936 -4.32372 1.93998 1.95934 3.34502 3.36312 3.51813 4.36353 4.69926 4.91098 5.06910 5.09934 5.24680 5.60053 5.76297 5.95516 6.13112 6.20774 6.44712 6.67781 6.78240 7.17332 7.29001 7.53797 7.83317 7.85678 7.96534 8.19851 8.62714 8.90093 9.39868 10.80666 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.032966 B = 0.014653 C = 0.012196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.154700 B = 1910.412982 C = 2295.323366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 1.070 2.930 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.597 4.597 8 H 0.057 0.943 9 C 0.069 3.931 10 H 0.043 0.957 11 C 0.076 3.924 12 N -0.856 5.856 13 C -0.099 4.099 14 C 0.142 3.858 15 N -0.527 5.527 16 C 0.243 3.757 17 N -0.524 5.524 18 C 0.126 3.874 19 H 0.271 0.729 20 H 0.026 0.974 21 H 0.060 0.940 22 H 0.334 0.666 23 H 0.328 0.672 24 H 0.154 0.846 25 H 0.179 0.821 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -5.291 -0.716 5.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.181 4.181 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.635 4.635 8 H 0.076 0.924 9 C 0.049 3.951 10 H 0.062 0.938 11 C -0.054 4.054 12 N -0.384 5.384 13 C -0.104 4.104 14 C -0.023 4.023 15 N -0.241 5.241 16 C -0.045 4.045 17 N -0.238 5.238 18 C -0.039 4.039 19 H 0.083 0.917 20 H 0.044 0.956 21 H 0.078 0.922 22 H 0.146 0.854 23 H 0.139 0.861 24 H 0.171 0.829 25 H 0.196 0.804 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.724 -3.974 1.048 4.457 hybrid contribution 0.681 -1.098 -1.795 2.212 sum 2.405 -5.073 -0.747 5.663 Atomic orbital electron populations 1.70793 1.06876 1.31325 1.44289 1.25908 0.96430 1.02862 0.92913 0.83518 0.74782 0.74919 0.77022 1.21340 1.21165 1.20794 1.21826 0.94953 0.90478 1.56217 0.92444 1.17979 0.95961 0.93168 0.88030 0.93846 1.21923 0.96194 0.88729 0.98539 1.58846 1.12579 1.11811 1.55144 1.22272 0.94402 0.92590 1.01108 1.22764 1.00490 0.91650 0.87436 1.68227 1.18215 1.14384 1.23293 1.24429 0.85062 0.96656 0.98364 1.68184 1.40058 1.13184 1.02343 1.22880 0.94884 0.92926 0.93181 0.91743 0.95556 0.92192 0.85384 0.86085 0.82860 0.80389 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.63 55.43 0.76 -24.68 15 2 C 0.03 0.67 5.45 -17.82 -0.10 0.57 15 3 Si 1.07 23.93 29.91 -169.99 -5.08 18.84 15 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.60 -15.15 7.97 -34.44 -0.27 -15.43 15 8 H 0.06 1.44 7.82 -52.49 -0.41 1.03 15 9 C 0.07 1.55 1.77 -92.92 -0.16 1.39 15 10 H 0.04 1.04 6.69 -51.93 -0.35 0.69 15 11 C 0.08 1.45 6.06 -3.82 -0.02 1.43 15 12 N -0.86 -13.95 9.35 -10.37 -0.10 -14.04 15 13 C -0.10 -2.21 4.43 -104.36 -0.46 -2.67 15 14 C 0.14 3.09 10.10 -17.20 -0.17 2.92 15 15 N -0.53 -11.12 10.44 -14.58 -0.15 -11.27 15 16 C 0.24 4.84 12.29 -92.15 -1.13 3.71 15 17 N -0.52 -11.16 10.44 -14.58 -0.15 -11.31 15 18 C 0.13 2.77 10.51 -17.20 -0.18 2.59 15 19 H 0.27 7.51 6.23 -40.82 -0.25 7.25 15 20 H 0.03 0.50 8.14 -51.93 -0.42 0.07 15 21 H 0.06 1.13 7.29 -51.93 -0.38 0.76 15 22 H 0.33 5.16 8.99 -39.29 -0.35 4.81 15 23 H 0.33 4.47 9.08 -39.29 -0.36 4.12 15 24 H 0.15 3.13 7.62 -52.49 -0.40 2.73 15 25 H 0.18 2.83 8.06 -52.49 -0.42 2.40 15 26 H 0.15 3.10 8.01 -52.48 -0.42 2.68 15 LS Contribution 231.56 15.07 3.49 3.49 Total: -1.00 -29.12 231.56 -6.31 -35.43 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -2.56 Total: 9.04 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.51 Total: -5.50 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.35 Total: -61.30 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.84 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.12 -6.31 -35.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573731.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.771 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds