Wall clock time and date at job start Mon Mar 30 2020 02:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48503 * 109.47499 * 89.99486 * 3 2 1 5 5 H 1.48499 * 109.47320 * 209.99633 * 3 2 1 6 6 H 1.48506 * 109.47061 * 329.99506 * 3 2 1 7 7 C 1.37869 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00577 * 186.73168 * 7 2 1 9 9 C 1.50703 * 119.99735 * 6.73115 * 7 2 1 10 10 H 1.09002 * 109.46968 * 33.06697 * 9 7 2 11 11 C 1.53004 * 109.47271 * 153.06679 * 9 7 2 12 12 N 1.46898 * 109.47161 * 185.27842 * 11 9 7 13 13 C 1.50697 * 109.47164 * 273.06944 * 9 7 2 14 14 C 1.38600 * 120.79743 * 299.71957 * 13 9 7 15 15 N 1.32337 * 119.10020 * 179.71973 * 14 13 9 16 16 C 1.31798 * 120.81989 * 0.56785 * 15 14 13 17 17 N 1.31799 * 121.75316 * 359.70401 * 16 15 14 18 18 C 1.32330 * 120.81699 * 0.02562 * 17 16 15 19 19 H 0.96997 * 119.99892 * 174.74589 * 1 2 3 20 20 H 1.08998 * 109.47313 * 305.28190 * 11 9 7 21 21 H 1.09007 * 109.46860 * 65.27992 * 11 9 7 22 22 H 1.00898 * 110.99906 * 56.05316 * 12 11 9 23 23 H 1.00901 * 110.99868 * 180.02562 * 12 11 9 24 24 H 1.07991 * 120.44777 * 359.97438 * 14 13 9 25 25 H 1.07999 * 119.12047 * 179.72888 * 16 15 14 26 26 H 1.08006 * 120.44726 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6527 -0.7002 7 6 2.0045 -1.1939 0.0005 8 1 3.0789 -1.1972 0.1102 9 6 1.2588 -2.4947 -0.1519 10 1 0.3927 -2.3435 -0.7961 11 6 2.1827 -3.5421 -0.7767 12 7 1.4218 -4.7704 -1.0417 13 6 0.8006 -2.9726 1.2019 14 6 1.7166 -3.2447 2.2058 15 7 1.2767 -3.6573 3.3838 16 6 -0.0124 -3.8205 3.6039 17 7 -0.9116 -3.5769 2.6715 18 6 -0.5465 -3.1565 1.4710 19 1 -0.4850 -0.8365 -0.0769 20 1 2.5883 -3.1570 -1.7122 21 1 2.9998 -3.7619 -0.0896 22 1 0.6207 -4.5807 -1.6249 23 1 2.0105 -5.4784 -1.4544 24 1 2.7745 -3.1177 2.0305 25 1 -0.3408 -4.1627 4.5742 26 1 -1.2884 -2.9583 0.7115 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573731.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:29 Heat of formation + Delta-G solvation = 11.209094 kcal Electronic energy + Delta-G solvation = -11911.111499 eV Core-core repulsion = 9795.330780 eV Total energy + Delta-G solvation = -2115.780719 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.76433 -37.60034 -34.62629 -34.42472 -32.81058 -29.46955 -25.92250 -25.38611 -24.69152 -22.01800 -19.10157 -18.46333 -18.17194 -16.71488 -15.88962 -15.68399 -15.49096 -15.20368 -14.45478 -14.33628 -14.14888 -13.54667 -13.35869 -12.68582 -11.96803 -11.78366 -11.66072 -11.58986 -11.03848 -10.59653 -10.05769 -9.84332 -9.54617 -8.63131 -6.37465 0.24938 0.28941 1.54760 1.60747 1.77872 2.54503 3.02337 3.17207 3.40843 3.41900 3.84363 3.93426 4.09053 4.28212 4.55647 4.60012 4.81680 5.03973 5.12847 5.41696 5.64354 5.92590 6.14825 6.20061 6.28855 6.56344 6.69707 7.24712 7.41636 8.76600 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.032966 B = 0.014653 C = 0.012196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.154700 B = 1910.412982 C = 2295.323366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.023 4.023 3 Si 1.109 2.891 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.286 1.286 7 C -0.598 4.598 8 H 0.058 0.942 9 C 0.070 3.930 10 H 0.023 0.977 11 C 0.088 3.912 12 N -0.855 5.855 13 C -0.111 4.111 14 C 0.136 3.864 15 N -0.532 5.532 16 C 0.244 3.756 17 N -0.533 5.533 18 C 0.117 3.883 19 H 0.263 0.737 20 H 0.025 0.975 21 H 0.062 0.938 22 H 0.340 0.660 23 H 0.347 0.653 24 H 0.163 0.837 25 H 0.220 0.780 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 -5.837 -0.265 6.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.223 4.223 3 Si 0.932 3.068 4 H -0.210 1.210 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.636 4.636 8 H 0.076 0.924 9 C 0.050 3.950 10 H 0.041 0.959 11 C -0.043 4.043 12 N -0.385 5.385 13 C -0.115 4.115 14 C -0.030 4.030 15 N -0.245 5.245 16 C -0.044 4.044 17 N -0.246 5.246 18 C -0.048 4.048 19 H 0.074 0.926 20 H 0.043 0.957 21 H 0.081 0.919 22 H 0.152 0.848 23 H 0.160 0.840 24 H 0.180 0.820 25 H 0.236 0.764 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.522 -4.554 1.488 5.414 hybrid contribution 0.422 -1.027 -1.897 2.198 sum 2.944 -5.581 -0.409 6.323 Atomic orbital electron populations 1.70886 1.07852 1.30997 1.47089 1.27071 0.96522 1.06115 0.92638 0.83017 0.74667 0.71882 0.77230 1.21049 1.18885 1.21218 1.22149 0.95147 0.91701 1.54651 0.92414 1.17898 0.95549 0.93315 0.88272 0.95850 1.21667 0.95530 0.88892 0.98225 1.58734 1.12861 1.11060 1.55850 1.22181 0.94690 0.93758 1.00913 1.22973 1.00965 0.91474 0.87610 1.68313 1.18809 1.14570 1.22844 1.25286 0.84562 0.95074 0.99444 1.68257 1.40484 1.13561 1.02319 1.23018 0.95026 0.92957 0.93749 0.92587 0.95655 0.91924 0.84765 0.84015 0.81956 0.76376 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 13.63 21.44 0.29 -52.99 15 2 C -0.02 -1.23 5.45 84.65 0.46 -0.77 15 3 Si 1.11 47.68 29.91 68.60 2.05 49.73 15 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 6 H -0.29 -12.40 7.11 99.48 0.71 -11.70 15 7 C -0.60 -30.09 7.97 25.60 0.20 -29.88 15 8 H 0.06 2.84 7.82 -2.91 -0.02 2.82 15 9 C 0.07 3.13 1.77 -12.28 -0.02 3.11 15 10 H 0.02 1.13 6.69 -2.39 -0.02 1.11 15 11 C 0.09 3.22 6.06 86.30 0.52 3.74 15 12 N -0.85 -26.48 9.35 -186.71 -1.75 -28.22 15 13 C -0.11 -4.87 4.43 -19.69 -0.09 -4.95 15 14 C 0.14 5.70 10.10 84.70 0.86 6.55 15 15 N -0.53 -21.32 10.44 -200.04 -2.09 -23.41 15 16 C 0.24 9.14 12.29 180.88 2.22 11.36 15 17 N -0.53 -21.90 10.44 -200.04 -2.09 -23.99 15 18 C 0.12 5.08 10.51 84.70 0.89 5.97 15 19 H 0.26 14.90 6.23 -92.71 -0.58 14.32 15 20 H 0.03 0.93 8.14 -2.39 -0.02 0.91 15 21 H 0.06 2.26 7.29 -2.38 -0.02 2.25 15 22 H 0.34 10.07 8.99 -89.70 -0.81 9.27 15 23 H 0.35 8.68 9.08 -89.69 -0.81 7.87 15 24 H 0.16 6.39 7.62 -2.92 -0.02 6.37 15 25 H 0.22 6.15 8.06 -2.91 -0.02 6.12 15 26 H 0.15 6.36 8.01 -2.91 -0.02 6.34 15 Total: -1.00 -60.24 231.56 1.25 -58.99 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.22 Total: 24.76 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.05 Total: -4.87 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.63 Total: -128.61 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.05 Total: 49.73 kcal Total: -60.24 1.25 -58.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573731.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.198 kcal (2) G-P(sol) polarization free energy of solvation -60.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds