Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86794 * 120.00179 * 2 1 4 4 H 1.48506 * 109.47380 * 269.99766 * 3 2 1 5 5 H 1.48503 * 109.47103 * 29.99814 * 3 2 1 6 6 H 1.48506 * 109.47164 * 149.99622 * 3 2 1 7 7 C 1.40339 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.39797 * 120.00424 * 0.02562 * 7 2 1 10 10 N 1.32817 * 125.79690 * 0.02562 * 9 7 2 11 11 C 1.33064 * 108.64691 * 180.02562 * 10 9 7 12 12 C 1.35935 * 107.97946 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.31564 * 179.97438 * 12 11 10 14 14 C 1.53783 * 113.61022 * 219.13381 * 13 12 11 15 15 C 1.53956 * 87.01734 * 220.04579 * 14 13 12 16 16 C 1.53777 * 113.61510 * 121.52633 * 13 12 11 17 17 O 1.34591 * 107.36203 * 359.97438 * 12 11 10 18 18 H 0.96999 * 119.99549 * 0.02562 * 1 2 3 19 19 H 1.08001 * 126.00800 * 179.97438 * 11 10 9 20 20 H 1.09001 * 112.85088 * 350.32170 * 13 12 11 21 21 H 1.08999 * 113.61595 * 334.56451 * 14 13 12 22 22 H 1.08997 * 113.61575 * 105.46803 * 14 13 12 23 23 H 1.08998 * 113.53827 * 270.80897 * 15 14 13 24 24 H 1.09000 * 113.74350 * 139.94370 * 15 14 13 25 25 H 1.09004 * 113.61301 * 254.52572 * 16 13 12 26 26 H 1.08995 * 113.61649 * 25.42912 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4401 0.7001 7 6 2.0079 -1.2154 0.0005 8 1 3.0880 -1.2155 0.0001 9 6 1.3090 -2.4261 0.0005 10 7 -0.0124 -2.5602 -0.0004 11 6 -0.3084 -3.8576 0.0005 12 6 0.8589 -4.5542 0.0027 13 6 1.0030 -6.0543 0.0049 14 6 2.1489 -6.5617 0.8961 15 6 2.4509 -7.5856 -0.2134 16 6 1.7965 -6.5988 -1.1946 17 8 1.8621 -3.6570 0.0024 18 1 -0.4849 0.8401 -0.0004 19 1 -1.3014 -4.2823 0.0005 20 1 0.0576 -6.5701 0.1735 21 1 2.9438 -5.8307 1.0437 22 1 1.8099 -7.0138 1.8281 23 1 1.9022 -8.5209 -0.1036 24 1 3.5153 -7.7378 -0.3921 25 1 1.1732 -7.0807 -1.9479 26 1 2.4948 -5.8779 -1.6196 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260579989.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = 2.782067 kcal Electronic energy + Delta-G solvation = -11675.066361 eV Core-core repulsion = 9526.627467 eV Total energy + Delta-G solvation = -2148.438894 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.03726 -39.26921 -35.79657 -34.44942 -31.30466 -28.55460 -26.47266 -25.19570 -22.97945 -21.86926 -20.10033 -19.41140 -17.59247 -16.81929 -16.64335 -16.18651 -15.57892 -14.73292 -13.73030 -13.70990 -13.37217 -13.25432 -13.19695 -12.90708 -12.69490 -11.98989 -11.69477 -11.64749 -11.34183 -11.25824 -11.07242 -10.13858 -9.26955 -8.60355 -6.65159 1.08866 1.39471 1.56048 1.58765 2.16764 2.43999 2.80069 3.28664 3.80820 3.84383 3.92538 4.13173 4.28528 4.68491 4.75757 4.86715 4.89476 4.94961 5.06909 5.08642 5.15580 5.29754 5.56989 5.83527 6.02890 6.16785 6.52640 6.73629 7.96790 8.36635 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.078120 B = 0.009136 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.335520 B = 3064.018104 C = 3287.354751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.029 3.971 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.251 1.251 7 C -0.472 4.472 8 H 0.098 0.902 9 C 0.291 3.709 10 N -0.577 5.577 11 C -0.044 4.044 12 C -0.172 4.172 13 C -0.012 4.012 14 C -0.138 4.138 15 C -0.119 4.119 16 C -0.136 4.136 17 O -0.256 6.256 18 H 0.288 0.712 19 H 0.170 0.830 20 H 0.127 0.873 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -7.540 -0.158 8.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.192 4.192 3 Si 0.832 3.168 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.174 1.174 7 C -0.508 4.508 8 H 0.116 0.884 9 C 0.106 3.894 10 N -0.309 5.309 11 C -0.187 4.187 12 C -0.226 4.226 13 C -0.030 4.030 14 C -0.176 4.176 15 C -0.156 4.156 16 C -0.174 4.174 17 O -0.153 6.153 18 H 0.098 0.902 19 H 0.187 0.813 20 H 0.145 0.855 21 H 0.072 0.928 22 H 0.100 0.900 23 H 0.127 0.873 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.839 -6.941 -0.155 7.501 hybrid contribution 0.398 0.245 -0.012 0.468 sum 3.238 -6.696 -0.167 7.439 Atomic orbital electron populations 1.70104 1.09305 1.30307 1.30185 1.27064 0.95889 1.04437 0.91804 0.84751 0.78558 0.73618 0.79871 1.18124 1.18628 1.17445 1.18651 0.95071 0.86835 1.50194 0.88416 1.22845 0.87585 0.84020 0.94940 1.71334 1.12244 1.16747 1.30565 1.23469 0.98964 0.90947 1.05322 1.23304 0.85894 0.93081 1.20360 1.20989 1.00040 0.83315 0.98663 1.22961 0.97558 0.98548 0.98486 1.22812 1.01510 0.97125 0.94173 1.22957 0.99173 0.98455 0.96807 1.84335 1.38073 1.17123 1.75744 0.90182 0.81277 0.85480 0.92753 0.89952 0.87269 0.90714 0.89774 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.14 11.88 21.90 0.26 -43.88 15 2 C 0.03 1.53 5.50 85.38 0.47 2.00 15 3 Si 1.01 38.81 29.56 68.60 2.03 40.83 15 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 6 H -0.25 -9.13 7.11 99.48 0.71 -8.42 15 7 C -0.47 -27.54 9.45 23.16 0.22 -27.32 15 8 H 0.10 5.28 7.85 -2.91 -0.02 5.25 15 9 C 0.29 17.98 7.74 84.92 0.66 18.64 15 10 N -0.58 -35.84 9.43 -309.37 -2.92 -38.76 15 11 C -0.04 -2.34 11.81 83.97 0.99 -1.35 15 12 C -0.17 -8.44 6.41 25.15 0.16 -8.28 15 13 C -0.01 -0.41 4.21 -11.01 -0.05 -0.45 15 14 C -0.14 -4.24 7.64 31.18 0.24 -4.00 15 15 C -0.12 -2.84 8.09 31.18 0.25 -2.58 15 16 C -0.14 -4.14 7.63 31.12 0.24 -3.91 15 17 O -0.26 -14.60 10.59 -11.74 -0.12 -14.72 15 18 H 0.29 14.55 8.29 -92.71 -0.77 13.78 15 19 H 0.17 7.61 8.06 -2.91 -0.02 7.59 15 20 H 0.13 3.70 8.14 -2.39 -0.02 3.68 15 21 H 0.05 1.97 7.90 -2.39 -0.02 1.96 15 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.08 2.17 8.14 -2.38 -0.02 2.16 15 26 H 0.05 1.90 8.09 -2.39 -0.02 1.89 15 Total: -1.00 -71.10 232.18 3.60 -67.50 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.17 Total: 16.28 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.18 Total: -27.25 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -2.66 Total: -82.64 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.12 Total: -14.72 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Total: -71.10 3.60 -67.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579989.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.285 kcal (2) G-P(sol) polarization free energy of solvation -71.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds