Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30914 * 1 3 3 Si 1.86794 * 120.00381 * 2 1 4 4 H 1.48504 * 109.47196 * 240.00049 * 3 2 1 5 5 H 1.48498 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99683 * 3 2 1 7 7 C 1.39817 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.41407 * 120.00020 * 0.27906 * 7 2 1 10 10 C 1.41950 * 126.02671 * 179.43758 * 9 7 2 11 11 C 1.34486 * 107.63061 * 179.79856 * 10 9 7 12 12 N 1.37085 * 108.34271 * 0.50791 * 11 10 9 13 13 N 1.33200 * 126.02558 * 359.74951 * 9 7 2 14 14 C 1.46586 * 123.66058 * 179.54466 * 12 11 10 15 15 C 1.53289 * 108.85428 * 340.69940 * 14 12 11 16 16 C 1.53252 * 109.91699 * 49.97292 * 15 14 12 17 17 N 1.39675 * 129.30761 * 180.29031 * 11 10 9 18 18 H 0.97005 * 119.99734 * 0.02562 * 1 2 3 19 19 H 1.07999 * 126.18460 * 359.92936 * 10 9 7 20 20 H 1.09006 * 109.57239 * 100.50926 * 14 12 11 21 21 H 1.09006 * 109.57573 * 220.75633 * 14 12 11 22 22 H 1.09000 * 109.39672 * 170.11371 * 15 14 12 23 23 H 1.09005 * 109.39358 * 289.92530 * 15 14 12 24 24 H 1.09003 * 109.61921 * 56.56387 * 16 15 14 25 25 H 1.09000 * 109.61765 * 176.92685 * 16 15 14 26 26 H 0.96994 * 121.96863 * 347.68201 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 3.0970 1.6963 -1.2125 5 1 1.2783 2.7464 -0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0082 -1.2109 0.0005 8 1 3.0882 -1.2109 0.0001 9 6 1.3011 -2.4355 -0.0049 10 6 1.8779 -3.7325 -0.0163 11 6 0.8722 -4.6255 -0.0136 12 7 -0.3143 -3.9389 -0.0125 13 7 -0.0235 -2.5753 -0.0060 14 6 -1.6286 -4.5881 -0.0193 15 6 -1.4653 -6.0322 -0.5067 16 6 -0.3389 -6.7215 0.2711 17 7 0.9282 -6.0211 -0.0162 18 1 -0.4850 0.8401 -0.0004 19 1 2.9334 -3.9609 -0.0235 20 1 -2.0413 -4.5876 0.9895 21 1 -2.2990 -4.0485 -0.6884 22 1 -2.3977 -6.5747 -0.3505 23 1 -1.2213 -6.0303 -1.5691 24 1 -0.5494 -6.6736 1.3395 25 1 -0.2631 -7.7632 -0.0407 26 1 1.7513 -6.5017 -0.1960 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597025.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = 78.048725 kcal Electronic energy + Delta-G solvation = -11847.696189 eV Core-core repulsion = 9734.813854 eV Total energy + Delta-G solvation = -2112.882335 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46667 -35.84209 -32.96201 -32.42773 -29.29408 -27.08059 -25.92678 -23.82974 -21.59192 -19.51113 -18.50234 -16.43698 -15.79487 -15.21412 -14.72261 -14.35168 -13.44734 -13.35469 -12.90316 -12.40385 -12.03368 -11.40705 -11.06912 -10.84829 -10.72118 -10.69333 -10.22070 -9.84383 -9.40264 -8.68982 -8.19062 -7.24977 -6.28620 -6.18917 -4.11108 3.24895 3.29944 3.33276 3.72783 3.80428 4.24013 4.38116 4.57744 4.96090 5.15693 5.41777 5.65650 5.73612 5.84228 5.93169 6.12221 6.36197 6.97578 6.98224 7.32597 7.44317 7.57587 8.08656 8.36094 8.61332 8.92073 9.17038 9.40578 10.18981 10.78412 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.083118 B = 0.010086 C = 0.009114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.789523 B = 2775.410644 C = 3071.315288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.445 4.445 8 H 0.077 0.923 9 C 0.226 3.774 10 C -0.357 4.357 11 C 0.316 3.684 12 N -0.442 5.442 13 N -0.325 5.325 14 C 0.153 3.847 15 C -0.153 4.153 16 C 0.129 3.871 17 N -0.754 5.754 18 H 0.268 0.732 19 H 0.114 0.886 20 H 0.056 0.944 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -9.641 -0.243 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.485 4.485 8 H 0.096 0.904 9 C 0.071 3.929 10 C -0.391 4.391 11 C 0.098 3.902 12 N -0.230 5.230 13 N -0.153 5.153 14 C 0.029 3.971 15 C -0.192 4.192 16 C 0.004 3.996 17 N -0.398 5.398 18 H 0.079 0.921 19 H 0.132 0.868 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.285 -9.037 -0.205 9.618 hybrid contribution 1.434 0.040 -0.080 1.436 sum -1.851 -8.998 -0.285 9.191 Atomic orbital electron populations 1.69972 1.06802 1.27330 1.36623 1.25790 0.94758 1.00346 0.93814 0.86439 0.79786 0.81291 0.79342 1.19449 1.20844 1.19431 1.18552 0.93346 0.88036 1.48560 0.90444 1.19272 0.89760 0.91621 0.92235 1.20288 0.96128 0.92667 1.30034 1.18205 0.89004 0.82256 1.00744 1.49207 1.01724 1.06061 1.66038 1.78896 1.14174 0.83868 1.38378 1.21054 0.84378 0.91003 1.00679 1.22247 0.99484 0.96182 1.01289 1.21356 0.84607 0.95273 0.98389 1.43903 1.10326 1.01694 1.83916 0.92120 0.86750 0.92617 0.90581 0.89759 0.91007 0.93213 0.90888 0.75769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -23.18 11.93 55.54 0.66 -22.51 15 2 C 0.07 2.02 5.49 -17.35 -0.10 1.93 15 3 Si 0.91 20.66 29.56 -169.99 -5.02 15.64 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.45 -13.18 9.39 -37.79 -0.35 -13.54 15 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 15 9 C 0.23 6.81 6.76 -84.65 -0.57 6.24 15 10 C -0.36 -9.41 10.77 -39.49 -0.43 -9.84 15 11 C 0.32 7.47 7.56 -151.86 -1.15 6.32 15 12 N -0.44 -11.11 4.10 -60.06 -0.25 -11.36 15 13 N -0.33 -9.83 10.88 32.35 0.35 -9.48 15 14 C 0.15 2.91 7.32 -3.85 -0.03 2.88 15 15 C -0.15 -2.17 6.08 -26.45 -0.16 -2.33 15 16 C 0.13 1.80 7.08 -3.31 -0.02 1.78 15 17 N -0.75 -13.26 6.08 -59.37 -0.36 -13.62 15 18 H 0.27 7.33 8.30 -40.82 -0.34 6.99 15 19 H 0.11 2.75 8.06 -52.49 -0.42 2.33 15 20 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 21 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.41 6.04 8.96 -40.82 -0.37 5.68 15 LS Contribution 226.35 15.07 3.41 3.41 Total: -1.00 -34.66 226.35 -6.89 -41.55 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.87 Total: 2.94 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.81 Total: -6.57 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.41 Total: -56.96 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -34.66 -6.89 -41.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597025.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.599 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds