Wall clock time and date at job start Mon Mar 30 2020 02:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30914 * 1 3 3 Si 1.86794 * 120.00381 * 2 1 4 4 H 1.48504 * 109.47196 * 240.00049 * 3 2 1 5 5 H 1.48498 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99683 * 3 2 1 7 7 C 1.39817 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.41407 * 120.00020 * 0.27906 * 7 2 1 10 10 C 1.41950 * 126.02671 * 179.43758 * 9 7 2 11 11 C 1.34486 * 107.63061 * 179.79856 * 10 9 7 12 12 N 1.37085 * 108.34271 * 0.50791 * 11 10 9 13 13 N 1.33200 * 126.02558 * 359.74951 * 9 7 2 14 14 C 1.46586 * 123.66058 * 179.54466 * 12 11 10 15 15 C 1.53289 * 108.85428 * 340.69940 * 14 12 11 16 16 C 1.53252 * 109.91699 * 49.97292 * 15 14 12 17 17 N 1.39675 * 129.30761 * 180.29031 * 11 10 9 18 18 H 0.97005 * 119.99734 * 0.02562 * 1 2 3 19 19 H 1.07999 * 126.18460 * 359.92936 * 10 9 7 20 20 H 1.09006 * 109.57239 * 100.50926 * 14 12 11 21 21 H 1.09006 * 109.57573 * 220.75633 * 14 12 11 22 22 H 1.09000 * 109.39672 * 170.11371 * 15 14 12 23 23 H 1.09005 * 109.39358 * 289.92530 * 15 14 12 24 24 H 1.09003 * 109.61921 * 56.56387 * 16 15 14 25 25 H 1.09000 * 109.61765 * 176.92685 * 16 15 14 26 26 H 0.96994 * 121.96863 * 347.68201 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 3.0970 1.6963 -1.2125 5 1 1.2783 2.7464 -0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0082 -1.2109 0.0005 8 1 3.0882 -1.2109 0.0001 9 6 1.3011 -2.4355 -0.0049 10 6 1.8779 -3.7325 -0.0163 11 6 0.8722 -4.6255 -0.0136 12 7 -0.3143 -3.9389 -0.0125 13 7 -0.0235 -2.5753 -0.0060 14 6 -1.6286 -4.5881 -0.0193 15 6 -1.4653 -6.0322 -0.5067 16 6 -0.3389 -6.7215 0.2711 17 7 0.9282 -6.0211 -0.0162 18 1 -0.4850 0.8401 -0.0004 19 1 2.9334 -3.9609 -0.0235 20 1 -2.0413 -4.5876 0.9895 21 1 -2.2990 -4.0485 -0.6884 22 1 -2.3977 -6.5747 -0.3505 23 1 -1.2213 -6.0303 -1.5691 24 1 -0.5494 -6.6736 1.3395 25 1 -0.2631 -7.7632 -0.0407 26 1 1.7513 -6.5017 -0.1960 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597025.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:13 Heat of formation + Delta-G solvation = 52.531817 kcal Electronic energy + Delta-G solvation = -11848.802685 eV Core-core repulsion = 9734.813854 eV Total energy + Delta-G solvation = -2113.988832 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.29894 -37.43824 -35.00462 -34.02483 -31.12195 -28.94424 -27.82615 -25.49622 -23.13615 -21.51155 -20.12711 -18.37612 -17.50083 -16.96490 -16.29876 -16.08491 -15.19862 -14.73959 -14.49334 -14.25270 -13.64509 -13.08774 -12.86320 -12.63414 -12.43084 -12.10097 -11.91751 -11.77749 -11.22462 -10.53444 -10.28191 -9.26265 -8.29466 -8.11932 -6.32047 1.43830 1.44898 1.57712 1.83948 2.20498 2.35351 2.48153 2.84393 3.67845 3.72181 3.92475 4.23943 4.45236 4.61379 4.70877 4.77059 5.01346 5.15058 5.30650 5.39459 5.49318 5.67067 6.07210 6.43367 6.91832 6.99880 7.18349 7.28175 8.11113 8.69954 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.083118 B = 0.010086 C = 0.009114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.789523 B = 2775.410644 C = 3071.315288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.020 3.980 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.485 4.485 8 H 0.082 0.918 9 C 0.192 3.808 10 C -0.402 4.402 11 C 0.337 3.663 12 N -0.451 5.451 13 N -0.376 5.376 14 C 0.134 3.866 15 C -0.140 4.140 16 C 0.122 3.878 17 N -0.740 5.740 18 H 0.273 0.727 19 H 0.125 0.875 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.134 0.866 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.125 0.875 26 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -11.184 -0.252 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.194 4.194 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.037 3.963 10 C -0.436 4.436 11 C 0.116 3.884 12 N -0.241 5.241 13 N -0.205 5.205 14 C 0.012 3.988 15 C -0.179 4.179 16 C -0.002 4.002 17 N -0.385 5.385 18 H 0.083 0.917 19 H 0.142 0.858 20 H 0.083 0.917 21 H 0.088 0.912 22 H 0.152 0.848 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.143 0.857 26 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.409 -10.641 -0.214 11.176 hybrid contribution 1.363 0.337 -0.062 1.406 sum -2.046 -10.304 -0.276 10.509 Atomic orbital electron populations 1.70122 1.08809 1.28663 1.37423 1.26844 0.95688 1.04424 0.92469 0.85135 0.78269 0.75471 0.79877 1.18375 1.19815 1.18362 1.19001 0.93914 0.89309 1.50144 0.89976 1.19757 0.90436 0.93368 0.92739 1.20439 0.97459 0.92297 1.33449 1.18279 0.87784 0.84812 0.97574 1.49480 1.04105 1.05091 1.65404 1.78686 1.14696 0.87430 1.39708 1.21583 0.81921 0.93804 1.01472 1.22265 1.02190 0.92918 1.00547 1.21755 0.82333 0.97306 0.98781 1.44115 1.12823 0.99060 1.82537 0.91719 0.85753 0.91729 0.91219 0.84764 0.91640 0.92836 0.85724 0.74119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.53 11.93 21.81 0.26 -50.27 15 2 C 0.02 1.17 5.49 85.21 0.47 1.64 15 3 Si 0.99 43.18 29.56 68.60 2.03 45.21 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 7 C -0.48 -29.84 9.39 23.43 0.22 -29.62 15 8 H 0.08 4.73 7.84 -2.91 -0.02 4.71 15 9 C 0.19 12.05 6.76 40.64 0.27 12.32 15 10 C -0.40 -21.82 10.77 22.33 0.24 -21.58 15 11 C 0.34 15.84 7.56 130.31 0.99 16.83 15 12 N -0.45 -22.89 4.10 -343.94 -1.41 -24.30 15 13 N -0.38 -23.62 10.88 -51.57 -0.56 -24.18 15 14 C 0.13 4.97 7.32 86.46 0.63 5.60 15 15 C -0.14 -3.45 6.08 30.78 0.19 -3.26 15 16 C 0.12 2.83 7.08 86.25 0.61 3.44 15 17 N -0.74 -24.01 6.08 -341.75 -2.08 -26.08 15 18 H 0.27 15.34 8.30 -92.70 -0.77 14.57 15 19 H 0.12 6.17 8.06 -2.91 -0.02 6.15 15 20 H 0.06 2.25 8.14 -2.38 -0.02 2.23 15 21 H 0.07 2.63 8.14 -2.38 -0.02 2.61 15 22 H 0.13 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 15 25 H 0.12 1.75 8.14 -2.39 -0.02 1.74 15 26 H 0.42 11.23 8.96 -92.71 -0.83 10.39 15 Total: -1.00 -79.83 226.35 2.22 -77.61 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.36 Total: 16.64 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 3.62 Total: -14.63 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -3.79 Total: -124.83 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -79.83 2.22 -77.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597025.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.143 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds