Wall clock time and date at job start Mon Mar 30 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.85261 * 2 1 4 4 C 1.54692 * 111.01993 * 236.24970 * 2 1 3 5 5 C 1.51101 * 105.11434 * 216.56593 * 4 2 1 6 6 O 1.34139 * 143.60331 * 196.66876 * 5 4 2 7 7 N 1.20995 * 111.52826 * 180.02562 * 6 5 4 8 8 C 1.30311 * 111.56535 * 359.97438 * 7 6 5 9 9 C 1.35038 * 110.11260 * 16.70581 * 5 4 2 10 10 C 1.50673 * 110.65030 * 359.92695 * 9 5 4 11 11 H 1.09004 * 110.34314 * 102.32334 * 10 9 5 12 12 C 1.50695 * 110.34528 * 224.47770 * 10 9 5 13 13 H 1.07999 * 120.00538 * 117.12045 * 12 10 9 14 14 C 1.37881 * 119.99661 * 297.12393 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 H 1.09000 * 109.47123 * 296.27877 * 1 2 3 21 21 H 1.09000 * 109.46960 * 56.28517 * 1 2 3 22 22 H 1.09001 * 109.46659 * 176.28125 * 1 2 3 23 23 H 1.09000 * 110.35272 * 97.62699 * 4 2 1 24 24 H 1.09003 * 110.33077 * 335.49511 * 4 2 1 25 25 H 1.07999 * 126.88966 * 180.02562 * 8 7 6 26 26 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0849 -0.8022 -1.2006 5 6 3.3199 -1.4957 -0.6742 6 8 4.4443 -2.1267 -1.0441 7 7 5.0867 -2.4882 -0.0846 8 6 4.5031 -2.1609 1.0336 9 6 3.3136 -1.4936 0.6762 10 6 2.0823 -0.8013 1.2007 11 1 1.3491 -1.5348 1.5362 12 6 2.4451 0.1292 2.3292 13 1 2.2801 1.1917 2.2273 14 6 2.9878 -0.3758 3.4917 15 7 3.1884 -1.6696 3.6160 16 14 3.4382 0.7777 4.8903 17 1 2.2725 0.9356 5.7966 18 1 3.8178 2.1024 4.3367 19 1 4.5824 0.2122 5.6494 20 1 -0.3633 0.4550 0.9214 21 1 -0.3633 0.5704 -0.8548 22 1 -0.3633 -1.0255 -0.0667 23 1 2.3475 -0.1296 -2.0172 24 1 1.3526 -1.5365 -1.5364 25 1 4.8589 -2.3610 2.0334 26 1 2.9542 -2.2687 2.8899 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260717491.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:21 Heat of formation + Delta-G solvation = 62.558870 kcal Electronic energy + Delta-G solvation = -12186.153838 eV Core-core repulsion = 10040.307061 eV Total energy + Delta-G solvation = -2145.846777 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.00851 -37.65619 -33.13175 -32.12684 -30.50369 -27.52570 -26.15633 -23.57732 -21.51459 -19.99231 -19.50731 -17.14164 -16.71581 -15.95557 -14.32823 -14.03518 -13.68740 -13.02229 -12.71337 -12.35788 -11.79721 -11.54811 -11.42040 -10.98335 -10.75386 -10.39958 -10.25433 -10.15318 -9.84509 -9.28483 -8.81219 -8.45594 -7.89760 -6.44415 -4.18215 2.34779 3.32219 3.40395 3.42728 3.48624 3.57796 4.46367 5.20257 5.32925 5.41998 5.48376 5.62047 5.82412 5.91604 6.05238 6.20480 6.26874 6.46041 6.67857 6.69171 6.76861 6.93769 7.16902 7.33812 8.04455 8.32787 8.76144 9.13577 9.54944 10.93919 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034529 B = 0.016668 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.726180 B = 1679.492628 C = 2301.374981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.012 4.012 5 C -0.122 4.122 6 O 0.093 5.907 7 N -0.391 5.391 8 C 0.020 3.980 9 C -0.155 4.155 10 C 0.095 3.905 11 H 0.039 0.961 12 C -0.588 4.588 13 H 0.055 0.945 14 C 0.022 3.978 15 N -0.908 5.908 16 Si 1.068 2.932 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.284 1.284 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.192 0.808 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 2.296 -6.160 7.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.050 4.050 5 C -0.186 4.186 6 O 0.028 5.972 7 N -0.097 5.097 8 C -0.157 4.157 9 C -0.159 4.159 10 C 0.076 3.924 11 H 0.057 0.943 12 C -0.626 4.626 13 H 0.073 0.927 14 C -0.183 4.183 15 N -0.544 5.544 16 Si 0.897 3.103 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.210 1.210 20 H 0.083 0.917 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.099 0.901 25 H 0.209 0.791 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.715 1.702 -4.935 5.495 hybrid contribution -0.987 0.223 -1.030 1.444 sum -2.703 1.925 -5.965 6.826 Atomic orbital electron populations 1.21683 0.94706 1.01181 1.01452 1.22100 0.95137 0.99392 0.93230 0.90144 1.20721 0.88426 0.97070 0.98816 1.25156 0.92837 1.03888 0.96717 1.84500 1.26454 1.55653 1.30544 1.74001 1.18825 1.21142 0.95776 1.24648 0.93548 0.99150 0.98328 1.22812 0.99297 0.99849 0.93960 1.17979 0.87819 0.93595 0.92968 0.94330 1.21962 1.46094 0.94181 1.00370 0.92700 1.25804 0.93949 0.98562 0.99971 1.70763 1.44700 1.03032 1.35937 0.83540 0.76917 0.74527 0.75332 1.21345 1.21510 1.20957 0.91737 0.93460 0.93105 0.91042 0.90140 0.79102 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.14 37.16 0.34 -1.75 15 2 C -0.08 -1.51 3.21 -88.91 -0.29 -1.80 15 3 H 0.08 1.56 7.78 -51.93 -0.40 1.16 15 4 C -0.01 -0.21 6.35 -26.80 -0.17 -0.38 15 5 C -0.12 -2.61 8.39 -35.25 -0.30 -2.90 15 6 O 0.09 2.04 11.21 16.89 0.19 2.23 15 7 N -0.39 -9.12 12.08 30.34 0.37 -8.76 15 8 C 0.02 0.49 10.95 -17.15 -0.19 0.30 15 9 C -0.15 -3.75 5.33 -104.73 -0.56 -4.31 15 10 C 0.10 2.28 2.03 -92.12 -0.19 2.09 15 11 H 0.04 0.98 7.75 -51.93 -0.40 0.58 15 12 C -0.59 -15.68 8.52 -34.44 -0.29 -15.97 15 13 H 0.05 1.45 7.61 -52.49 -0.40 1.05 15 14 C 0.02 0.60 5.33 -17.82 -0.09 0.50 15 15 N -0.91 -25.96 12.25 55.43 0.68 -25.28 15 16 Si 1.07 24.41 29.90 -169.99 -5.08 19.33 15 17 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.05 0.76 8.06 -51.93 -0.42 0.34 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.08 1.20 7.84 -51.93 -0.41 0.80 15 25 H 0.19 4.82 6.88 -52.49 -0.36 4.46 15 26 H 0.27 7.81 5.37 -40.82 -0.22 7.59 15 LS Contribution 221.70 15.07 3.34 3.34 Total: -1.00 -29.01 221.70 -4.92 -33.93 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -2.67 Total: -0.58 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -1.73 Total: -24.21 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 1.05 Total: -34.04 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.19 Total: 2.23 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.01 -4.92 -33.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260717491.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.486 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds