Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.85261 * 2 1 4 4 C 1.54692 * 111.01993 * 236.24970 * 2 1 3 5 5 C 1.51101 * 105.11434 * 216.56593 * 4 2 1 6 6 O 1.34139 * 143.60331 * 196.66876 * 5 4 2 7 7 N 1.20995 * 111.52826 * 180.02562 * 6 5 4 8 8 C 1.30311 * 111.56535 * 359.97438 * 7 6 5 9 9 C 1.35038 * 110.11260 * 16.70581 * 5 4 2 10 10 C 1.50673 * 110.65030 * 359.92695 * 9 5 4 11 11 H 1.09004 * 110.34314 * 102.32334 * 10 9 5 12 12 C 1.50695 * 110.34528 * 224.47770 * 10 9 5 13 13 H 1.07999 * 120.00538 * 117.12045 * 12 10 9 14 14 C 1.37881 * 119.99661 * 297.12393 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 H 1.09000 * 109.47123 * 296.27877 * 1 2 3 21 21 H 1.09000 * 109.46960 * 56.28517 * 1 2 3 22 22 H 1.09001 * 109.46659 * 176.28125 * 1 2 3 23 23 H 1.09000 * 110.35272 * 97.62699 * 4 2 1 24 24 H 1.09003 * 110.33077 * 335.49511 * 4 2 1 25 25 H 1.07999 * 126.88966 * 180.02562 * 8 7 6 26 26 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0849 -0.8022 -1.2006 5 6 3.3199 -1.4957 -0.6742 6 8 4.4443 -2.1267 -1.0441 7 7 5.0867 -2.4882 -0.0846 8 6 4.5031 -2.1609 1.0336 9 6 3.3136 -1.4936 0.6762 10 6 2.0823 -0.8013 1.2007 11 1 1.3491 -1.5348 1.5362 12 6 2.4451 0.1292 2.3292 13 1 2.2801 1.1917 2.2273 14 6 2.9878 -0.3758 3.4917 15 7 3.1884 -1.6696 3.6160 16 14 3.4382 0.7777 4.8903 17 1 2.2725 0.9356 5.7966 18 1 3.8178 2.1024 4.3367 19 1 4.5824 0.2122 5.6494 20 1 -0.3633 0.4550 0.9214 21 1 -0.3633 0.5704 -0.8548 22 1 -0.3633 -1.0255 -0.0667 23 1 2.3475 -0.1296 -2.0172 24 1 1.3526 -1.5365 -1.5364 25 1 4.8589 -2.3610 2.0334 26 1 2.9542 -2.2687 2.8899 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260717491.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = 45.557316 kcal Electronic energy + Delta-G solvation = -12186.891081 eV Core-core repulsion = 10040.307061 eV Total energy + Delta-G solvation = -2146.584020 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.83757 -39.31493 -35.01872 -34.01402 -32.11591 -29.33217 -27.66671 -25.56280 -23.29830 -21.67063 -21.17975 -19.09885 -18.53472 -17.71224 -15.95596 -15.75312 -15.50205 -14.87622 -14.39176 -13.78289 -13.42309 -13.20288 -13.05929 -12.72990 -12.50671 -11.99304 -11.89024 -11.75894 -11.59711 -11.09515 -10.67280 -10.51184 -9.68517 -8.57974 -6.31819 0.58986 1.45021 1.53875 1.61202 1.77070 1.80947 2.57119 3.21204 3.52731 3.77743 3.96636 4.14866 4.23208 4.49262 4.69136 4.82828 4.85834 4.91540 5.04728 5.15951 5.25036 5.34697 5.42367 5.62374 6.04839 6.23519 6.64607 7.34206 7.48882 8.80679 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034529 B = 0.016668 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.726180 B = 1679.492628 C = 2301.374981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.096 4.096 6 O 0.105 5.895 7 N -0.397 5.397 8 C -0.001 4.001 9 C -0.199 4.199 10 C 0.086 3.914 11 H 0.014 0.986 12 C -0.599 4.599 13 H 0.052 0.948 14 C -0.027 4.027 15 N -0.933 5.933 16 Si 1.110 2.890 17 H -0.272 1.272 18 H -0.275 1.275 19 H -0.289 1.289 20 H 0.048 0.952 21 H 0.085 0.915 22 H 0.056 0.944 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.175 0.825 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 3.441 -7.865 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.093 0.907 4 C -0.043 4.043 5 C -0.160 4.160 6 O 0.040 5.960 7 N -0.102 5.102 8 C -0.177 4.177 9 C -0.203 4.203 10 C 0.067 3.933 11 H 0.032 0.968 12 C -0.637 4.637 13 H 0.070 0.930 14 C -0.226 4.226 15 N -0.570 5.570 16 Si 0.933 3.067 17 H -0.198 1.198 18 H -0.200 1.200 19 H -0.215 1.215 20 H 0.068 0.932 21 H 0.104 0.896 22 H 0.075 0.925 23 H 0.129 0.871 24 H 0.131 0.869 25 H 0.192 0.808 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.707 2.846 -6.646 7.720 hybrid contribution -0.694 -0.145 -0.547 0.896 sum -3.401 2.701 -7.194 8.403 Atomic orbital electron populations 1.21648 0.92101 1.02223 1.02430 1.22078 0.97272 0.98426 0.91603 0.90709 1.20977 0.86630 0.97900 0.98773 1.25949 0.92649 1.01440 0.95992 1.84475 1.26529 1.55125 1.29882 1.73968 1.19165 1.21526 0.95565 1.24525 0.94606 1.00386 0.98140 1.22888 0.99715 1.01975 0.95727 1.18044 0.87503 0.93206 0.94523 0.96804 1.22332 1.45310 0.94560 1.01472 0.92975 1.27049 0.93888 0.99094 1.02611 1.70858 1.46466 1.03798 1.35885 0.83000 0.76943 0.73454 0.73286 1.19769 1.20012 1.21531 0.93245 0.89613 0.92457 0.87077 0.86875 0.80817 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.14 71.98 0.66 -2.90 15 2 C -0.08 -2.64 3.21 -9.68 -0.03 -2.68 15 3 H 0.07 2.71 7.78 -2.39 -0.02 2.69 15 4 C -0.01 -0.15 6.35 30.55 0.19 0.04 15 5 C -0.10 -3.88 8.39 25.08 0.21 -3.67 15 6 O 0.11 4.44 11.21 70.60 0.79 5.23 15 7 N -0.40 -18.45 12.08 -59.18 -0.71 -19.17 15 8 C 0.00 -0.04 10.95 85.59 0.94 0.90 15 9 C -0.20 -9.60 5.33 -19.93 -0.11 -9.71 15 10 C 0.09 4.11 2.03 -11.77 -0.02 4.09 15 11 H 0.01 0.73 7.75 -2.39 -0.02 0.71 15 12 C -0.60 -32.18 8.52 25.60 0.22 -31.96 15 13 H 0.05 2.75 7.61 -2.91 -0.02 2.72 15 14 C -0.03 -1.51 5.33 84.65 0.45 -1.05 15 15 N -0.93 -54.96 12.25 21.45 0.26 -54.70 15 16 Si 1.11 49.49 29.90 68.60 2.05 51.54 15 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 19 H -0.29 -13.05 7.11 99.48 0.71 -12.35 15 20 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.06 1.53 8.06 -2.39 -0.02 1.51 15 23 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.11 2.76 7.84 -2.39 -0.02 2.74 15 25 H 0.17 9.25 6.88 -2.91 -0.02 9.23 15 26 H 0.26 15.69 5.37 -92.71 -0.50 15.19 15 Total: -1.00 -63.59 221.70 6.34 -57.25 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.45 Total: 6.79 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 2.51 Total: -46.94 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -0.45 Total: -73.86 kcal Atomic # 8 Polarization: 4.44 SS G_CDS: 0.79 Total: 5.23 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Total: -63.59 6.34 -57.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260717491.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.805 kcal (2) G-P(sol) polarization free energy of solvation -63.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds