Wall clock time and date at job start Mon Mar 30 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99645 * 2 1 4 4 H 1.48501 * 109.47385 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47507 * 30.00614 * 3 2 1 6 6 H 1.48508 * 109.46937 * 150.00094 * 3 2 1 7 7 C 1.37872 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99713 * 185.16174 * 7 2 1 9 9 C 1.50700 * 120.00277 * 5.15655 * 7 2 1 10 10 H 1.09003 * 109.57581 * 25.14405 * 9 7 2 11 11 C 1.53333 * 109.58109 * 264.87625 * 9 7 2 12 12 C 1.53276 * 109.79461 * 190.56877 * 11 9 7 13 13 N 1.47558 * 108.63944 * 62.90309 * 12 11 9 14 14 C 1.39158 * 116.19468 * 316.33254 * 13 12 11 15 15 N 1.30252 * 129.26215 * 192.92325 * 14 13 12 16 16 C 1.34715 * 109.13854 * 179.78663 * 15 14 13 17 17 C 1.34681 * 108.39346 * 0.04331 * 16 15 14 18 18 N 1.36650 * 122.15100 * 12.79416 * 14 13 12 19 19 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.41938 * 70.47129 * 11 9 7 21 21 H 1.09001 * 109.41962 * 310.66466 * 11 9 7 22 22 H 1.08994 * 109.60961 * 182.65123 * 12 11 9 23 23 H 1.08999 * 109.60443 * 303.15731 * 12 11 9 24 24 H 0.97006 * 121.90296 * 136.30995 * 13 12 11 25 25 H 1.08007 * 125.79825 * 180.02562 * 16 15 14 26 26 H 1.07999 * 126.60031 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0836 9 6 1.2556 -2.4965 -0.1184 10 1 0.3046 -2.3265 -0.6232 11 6 0.9998 -3.0705 1.2802 12 6 0.4791 -4.5075 1.1642 13 7 1.5227 -5.3377 0.5325 14 6 2.1699 -4.7800 -0.5660 15 7 2.9484 -5.3501 -1.4410 16 6 3.3514 -4.4304 -2.3390 17 6 2.8035 -3.2452 -2.0087 18 7 2.0529 -3.4563 -0.8842 19 1 -0.4850 0.8400 0.0004 20 1 0.2594 -2.4572 1.7938 21 1 1.9296 -3.0669 1.8491 22 1 0.2538 -4.8961 2.1572 23 1 -0.4213 -4.5217 0.5501 24 1 1.7451 -6.2217 0.8642 25 1 4.0033 -4.6125 -3.1807 26 1 2.9318 -2.3086 -2.5309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260932309.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:22 Heat of formation + Delta-G solvation = 63.133420 kcal Electronic energy + Delta-G solvation = -12093.415662 eV Core-core repulsion = 9979.886551 eV Total energy + Delta-G solvation = -2113.529112 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.97048 -36.15194 -33.91045 -31.91958 -29.40407 -27.85606 -26.16602 -22.97223 -21.59714 -20.33940 -18.48718 -16.83700 -16.34730 -15.27412 -14.76628 -14.59288 -13.82338 -13.17125 -12.88450 -12.56198 -12.34547 -11.66758 -11.19879 -11.04866 -10.82619 -10.52959 -10.13650 -9.68291 -9.22311 -8.94459 -8.75967 -8.28909 -6.55576 -6.37879 -4.47727 3.13501 3.21199 3.23965 3.34515 3.64679 4.13135 4.19584 4.36447 4.98789 5.48549 5.78485 5.92568 6.04669 6.11841 6.40964 6.54894 6.61985 6.84613 7.08154 7.28409 7.48404 7.58310 7.67865 7.98008 8.24333 8.56154 8.70675 9.19642 9.26903 10.68106 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.044977 B = 0.013656 C = 0.011180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.391863 B = 2049.912928 C = 2503.796795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.248 3.752 10 H 0.071 0.929 11 C -0.135 4.135 12 C 0.124 3.876 13 N -0.729 5.729 14 C 0.445 3.555 15 N -0.550 5.550 16 C -0.057 4.057 17 C -0.032 4.032 18 N -0.457 5.457 19 H 0.269 0.731 20 H 0.087 0.913 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.410 0.590 25 H 0.156 0.844 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -3.753 1.312 4.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.149 3.851 10 H 0.089 0.911 11 C -0.174 4.174 12 C 0.000 4.000 13 N -0.377 5.377 14 C 0.091 3.909 15 N -0.278 5.278 16 C -0.203 4.203 17 C -0.167 4.167 18 N -0.145 5.145 19 H 0.079 0.921 20 H 0.106 0.894 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.247 0.753 25 H 0.173 0.827 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.380 -4.158 1.398 4.403 hybrid contribution 0.245 1.526 0.139 1.552 sum 0.625 -2.632 1.538 3.111 Atomic orbital electron populations 1.69908 1.06137 1.27837 1.47978 1.25013 0.94972 0.99747 0.93595 0.86373 0.79838 0.82058 0.78576 1.20124 1.20885 1.19547 1.21101 0.93945 0.89245 1.52348 0.91672 1.19399 0.92233 0.85984 0.87514 0.91078 1.22347 1.01676 0.93578 0.99818 1.21708 0.89567 0.92118 0.96638 1.43415 1.42682 1.20124 1.31460 1.19674 0.97526 0.81655 0.92038 1.69949 1.19137 1.32350 1.06401 1.21873 1.07124 0.89550 1.01787 1.22117 1.01228 1.00374 0.93025 1.46520 1.37911 1.07699 1.22343 0.92102 0.89436 0.92120 0.90805 0.93076 0.75270 0.82681 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 12.85 55.43 0.71 -22.75 15 2 C 0.07 1.85 5.45 -17.82 -0.10 1.76 15 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.53 -13.75 7.99 -34.44 -0.28 -14.02 15 8 H 0.07 1.75 7.82 -52.48 -0.41 1.34 15 9 C 0.25 6.03 3.14 -68.97 -0.22 5.81 15 10 H 0.07 1.90 7.39 -51.93 -0.38 1.52 15 11 C -0.13 -2.81 5.40 -26.42 -0.14 -2.96 15 12 C 0.12 2.16 7.08 -3.32 -0.02 2.13 15 13 N -0.73 -13.53 6.05 -60.68 -0.37 -13.90 15 14 C 0.44 9.97 8.68 -318.95 -2.77 7.21 15 15 N -0.55 -12.50 11.27 -13.65 -0.15 -12.65 15 16 C -0.06 -1.21 11.86 -17.55 -0.21 -1.41 15 17 C -0.03 -0.71 11.03 -16.57 -0.18 -0.89 15 18 N -0.46 -10.78 3.03 -111.54 -0.34 -11.12 15 19 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 20 H 0.09 1.83 8.14 -51.93 -0.42 1.41 15 21 H 0.06 1.31 8.10 -51.93 -0.42 0.89 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.41 6.46 8.96 -40.82 -0.37 6.09 15 25 H 0.16 2.71 8.06 -52.48 -0.42 2.29 15 26 H 0.16 3.35 8.06 -52.49 -0.42 2.93 15 LS Contribution 225.82 15.07 3.40 3.40 Total: -1.00 -28.95 225.82 -8.51 -37.46 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -2.83 Total: 6.88 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.91 Total: -2.38 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.15 Total: -60.42 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.95 -8.51 -37.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260932309.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.590 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds