Wall clock time and date at job start Mon Mar 30 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99742 * 2 1 4 4 H 1.48504 * 109.47461 * 274.99802 * 3 2 1 5 5 H 1.48506 * 109.47169 * 34.99773 * 3 2 1 6 6 H 1.48500 * 109.47190 * 154.99529 * 3 2 1 7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 189.66435 * 7 2 1 9 9 C 1.50700 * 120.00150 * 9.66291 * 7 2 1 10 10 H 1.08994 * 109.71301 * 304.95479 * 9 7 2 11 11 C 1.53423 * 109.71698 * 184.29848 * 9 7 2 12 12 C 1.53160 * 109.25205 * 191.62189 * 11 9 7 13 13 C 1.53305 * 109.48625 * 69.18475 * 12 11 9 14 14 N 1.46294 * 108.77479 * 309.86764 * 13 12 11 15 15 N 1.39755 * 128.31786 * 197.08026 * 14 13 12 16 16 C 1.30973 * 106.58745 * 179.88277 * 15 14 13 17 17 N 1.33475 * 109.00343 * 0.28179 * 16 15 14 18 18 C 1.30319 * 109.72395 * 359.59164 * 17 16 15 19 19 H 0.96994 * 120.00457 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.51343 * 311.55996 * 11 9 7 21 21 H 1.09007 * 109.50413 * 71.65013 * 11 9 7 22 22 H 1.09005 * 109.46623 * 189.18984 * 12 11 9 23 23 H 1.09001 * 109.46862 * 309.17608 * 12 11 9 24 24 H 1.08998 * 109.58440 * 69.65611 * 13 12 11 25 25 H 1.08998 * 109.58537 * 190.08439 * 13 12 11 26 26 H 1.07997 * 125.50014 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5032 2.6199 0.8030 6 1 3.5954 1.4121 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0731 -1.2006 0.1576 9 6 1.2672 -2.4900 -0.2179 10 1 0.4595 -2.5804 0.5083 11 6 2.2366 -3.6693 -0.0651 12 6 1.5598 -4.9479 -0.5680 13 6 1.3910 -4.8725 -2.0898 14 7 0.7680 -3.5938 -2.4317 15 7 0.1376 -3.2284 -3.6243 16 6 -0.2672 -1.9924 -3.4698 17 7 0.0817 -1.5697 -2.2528 18 6 0.7005 -2.5239 -1.6164 19 1 -0.4850 0.8400 0.0004 20 1 3.1362 -3.4793 -0.6503 21 1 2.5038 -3.7870 0.9852 22 1 2.1766 -5.8098 -0.3130 23 1 0.5814 -5.0498 -0.0985 24 1 2.3671 -4.9433 -2.5697 25 1 0.7551 -5.6907 -2.4279 26 1 -0.7935 -1.4078 -4.2098 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006162.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:44 Heat of formation + Delta-G solvation = 81.933809 kcal Electronic energy + Delta-G solvation = -12222.223296 eV Core-core repulsion = 10109.509431 eV Total energy + Delta-G solvation = -2112.713865 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.05516 -36.18089 -33.39736 -31.13148 -29.47386 -28.67724 -25.17458 -22.43127 -21.79560 -20.65732 -18.32378 -16.59252 -15.47929 -15.11743 -14.50458 -14.11392 -13.73655 -13.25867 -12.75933 -12.15761 -11.62600 -11.45524 -11.16947 -10.87107 -10.54318 -10.48416 -10.05439 -9.69927 -9.25492 -8.65378 -8.57279 -8.26215 -8.07815 -5.96287 -4.02451 2.78252 3.30007 3.39307 3.45395 3.45971 4.29111 4.52124 5.02047 5.23468 5.30786 5.41459 5.55140 5.78985 5.94725 6.03011 6.08567 6.35152 6.54821 6.69384 6.87893 7.45385 7.48928 7.61064 7.88660 8.01872 8.28425 8.95310 9.51121 9.64054 11.12204 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.042396 B = 0.015703 C = 0.012596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.286498 B = 1782.619328 C = 2222.416563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.089 3.911 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.118 3.882 10 H 0.063 0.937 11 C -0.116 4.116 12 C -0.137 4.137 13 C 0.138 3.862 14 N -0.407 5.407 15 N -0.366 5.366 16 C 0.170 3.830 17 N -0.494 5.494 18 C 0.325 3.675 19 H 0.262 0.738 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -7.131 -1.092 7.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.120 4.120 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.097 3.903 10 H 0.081 0.919 11 C -0.154 4.154 12 C -0.176 4.176 13 C 0.014 3.986 14 N -0.199 5.199 15 N -0.195 5.195 16 C -0.133 4.133 17 N -0.219 5.219 18 C 0.050 3.950 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.830 -7.177 -1.629 7.583 hybrid contribution 0.442 0.863 -0.257 1.003 sum 2.272 -6.314 -1.886 6.970 Atomic orbital electron populations 1.69932 1.05946 1.26720 1.43824 1.24852 0.94573 0.98901 0.93668 0.86674 0.79919 0.83897 0.77973 1.20712 1.21289 1.20046 1.20655 0.93937 0.89606 1.53878 0.92096 1.17725 0.94291 0.94342 0.83989 0.91892 1.21788 0.99129 0.93272 1.01244 1.22022 1.02312 1.00132 0.93102 1.21543 0.97314 0.83166 0.96540 1.50558 1.45229 1.12964 1.11180 1.77613 1.19759 1.16966 1.05172 1.26043 1.00053 0.91061 0.96103 1.70755 1.18219 1.29070 1.03811 1.26202 0.91378 0.80723 0.96716 0.92848 0.92255 0.91037 0.90244 0.91156 0.91004 0.90431 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.91 11.84 55.43 0.66 -23.25 15 2 C 0.09 2.47 4.89 -17.82 -0.09 2.38 15 3 Si 0.89 21.49 29.55 -169.99 -5.02 16.47 15 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.54 -14.61 8.46 -34.44 -0.29 -14.90 15 8 H 0.06 1.61 7.77 -52.49 -0.41 1.20 15 9 C 0.12 2.85 2.36 -92.59 -0.22 2.63 15 10 H 0.06 1.64 8.10 -51.93 -0.42 1.22 15 11 C -0.12 -2.16 5.24 -26.43 -0.14 -2.30 15 12 C -0.14 -2.07 5.95 -26.49 -0.16 -2.23 15 13 C 0.14 2.28 7.30 -4.00 -0.03 2.25 15 14 N -0.41 -8.99 4.04 -58.30 -0.24 -9.23 15 15 N -0.37 -8.30 12.74 29.38 0.37 -7.93 15 16 C 0.17 3.92 13.04 -91.39 -1.19 2.72 15 17 N -0.49 -13.13 9.25 -11.83 -0.11 -13.24 15 18 C 0.33 8.15 6.92 -155.78 -1.08 7.07 15 19 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 20 H 0.06 1.12 8.08 -51.93 -0.42 0.70 15 21 H 0.07 1.22 8.14 -51.92 -0.42 0.79 15 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.07 1.08 8.12 -51.93 -0.42 0.66 15 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.20 3.67 8.06 -52.49 -0.42 3.25 15 LS Contribution 223.90 15.07 3.37 3.37 Total: -1.00 -31.62 223.90 -7.07 -38.69 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -2.92 Total: -2.51 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.19 Total: -2.38 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.69 Total: -53.65 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.62 -7.07 -38.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006162.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.625 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds