Wall clock time and date at job start Mon Mar 30 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99742 * 2 1 4 4 H 1.48504 * 109.47461 * 274.99802 * 3 2 1 5 5 H 1.48506 * 109.47169 * 34.99773 * 3 2 1 6 6 H 1.48500 * 109.47190 * 154.99529 * 3 2 1 7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 189.66435 * 7 2 1 9 9 C 1.50700 * 120.00150 * 9.66291 * 7 2 1 10 10 H 1.08994 * 109.71301 * 304.95479 * 9 7 2 11 11 C 1.53423 * 109.71698 * 184.29848 * 9 7 2 12 12 C 1.53160 * 109.25205 * 191.62189 * 11 9 7 13 13 C 1.53305 * 109.48625 * 69.18475 * 12 11 9 14 14 N 1.46294 * 108.77479 * 309.86764 * 13 12 11 15 15 N 1.39755 * 128.31786 * 197.08026 * 14 13 12 16 16 C 1.30973 * 106.58745 * 179.88277 * 15 14 13 17 17 N 1.33475 * 109.00343 * 0.28179 * 16 15 14 18 18 C 1.30319 * 109.72395 * 359.59164 * 17 16 15 19 19 H 0.96994 * 120.00457 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.51343 * 311.55996 * 11 9 7 21 21 H 1.09007 * 109.50413 * 71.65013 * 11 9 7 22 22 H 1.09005 * 109.46623 * 189.18984 * 12 11 9 23 23 H 1.09001 * 109.46862 * 309.17608 * 12 11 9 24 24 H 1.08998 * 109.58440 * 69.65611 * 13 12 11 25 25 H 1.08998 * 109.58537 * 190.08439 * 13 12 11 26 26 H 1.07997 * 125.50014 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5032 2.6199 0.8030 6 1 3.5954 1.4121 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0731 -1.2006 0.1576 9 6 1.2672 -2.4900 -0.2179 10 1 0.4595 -2.5804 0.5083 11 6 2.2366 -3.6693 -0.0651 12 6 1.5598 -4.9479 -0.5680 13 6 1.3910 -4.8725 -2.0898 14 7 0.7680 -3.5938 -2.4317 15 7 0.1376 -3.2284 -3.6243 16 6 -0.2672 -1.9924 -3.4698 17 7 0.0817 -1.5697 -2.2528 18 6 0.7005 -2.5239 -1.6164 19 1 -0.4850 0.8400 0.0004 20 1 3.1362 -3.4793 -0.6503 21 1 2.5038 -3.7870 0.9852 22 1 2.1766 -5.8098 -0.3130 23 1 0.5814 -5.0498 -0.0985 24 1 2.3671 -4.9433 -2.5697 25 1 0.7551 -5.6907 -2.4279 26 1 -0.7935 -1.4078 -4.2098 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006162.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:43 Heat of formation + Delta-G solvation = 62.666693 kcal Electronic energy + Delta-G solvation = -12223.058781 eV Core-core repulsion = 10109.509431 eV Total energy + Delta-G solvation = -2113.549350 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.81571 -37.73630 -35.26542 -33.00626 -31.13218 -30.40996 -26.99261 -24.15421 -23.42215 -22.38028 -19.94534 -18.56293 -17.18823 -16.76619 -16.43071 -15.67531 -15.36592 -14.81580 -14.58591 -13.69517 -13.34829 -13.07023 -12.95378 -12.79144 -12.30747 -12.02224 -11.66020 -11.54616 -11.04143 -10.58851 -10.29849 -10.21123 -9.93377 -8.04052 -6.14413 0.99339 1.43352 1.47794 1.54456 1.75988 2.41596 2.54750 3.30998 3.65564 3.79680 3.97314 4.16507 4.37009 4.47296 4.61370 4.70601 4.91862 5.06848 5.20277 5.35141 5.61589 5.77815 5.80786 5.87490 6.15632 6.37395 6.90603 7.54365 7.71322 9.04062 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.042396 B = 0.015703 C = 0.012596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.286498 B = 1782.619328 C = 2222.416563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.061 0.939 9 C 0.110 3.890 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.125 4.125 13 C 0.123 3.877 14 N -0.402 5.402 15 N -0.366 5.366 16 C 0.160 3.840 17 N -0.540 5.540 18 C 0.304 3.696 19 H 0.258 0.742 20 H 0.057 0.943 21 H 0.086 0.914 22 H 0.130 0.870 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -8.536 -1.312 9.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.079 0.921 9 C 0.089 3.911 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.163 4.163 13 C 0.002 3.998 14 N -0.194 5.194 15 N -0.196 5.196 16 C -0.143 4.143 17 N -0.266 5.266 18 C 0.028 3.972 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.105 0.895 22 H 0.148 0.852 23 H 0.084 0.916 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.941 -8.617 -1.838 9.289 hybrid contribution 0.106 1.229 -0.212 1.251 sum 3.048 -7.389 -2.050 8.251 Atomic orbital electron populations 1.70054 1.07175 1.26939 1.45412 1.25536 0.95223 1.01813 0.93623 0.85818 0.79398 0.80637 0.77310 1.21711 1.20774 1.18789 1.21040 0.94100 0.91081 1.53177 0.92110 1.17718 0.94384 0.95803 0.83183 0.94798 1.21701 0.97743 0.92827 1.02517 1.22013 1.02680 0.99902 0.91727 1.22101 0.98454 0.81410 0.97847 1.50846 1.44340 1.14006 1.10226 1.77541 1.19603 1.16821 1.05588 1.26660 1.00254 0.91489 0.95873 1.70667 1.19426 1.31030 1.05492 1.26043 0.92194 0.81717 0.97214 0.93310 0.92439 0.89518 0.85193 0.91589 0.89018 0.87882 0.75489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.69 11.84 21.45 0.25 -50.44 15 2 C 0.04 2.46 4.89 84.65 0.41 2.88 15 3 Si 0.94 44.47 29.55 68.60 2.03 46.50 15 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 15 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 15 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 7 C -0.56 -30.08 8.46 25.60 0.22 -29.86 15 8 H 0.06 3.19 7.77 -2.91 -0.02 3.17 15 9 C 0.11 5.35 2.36 -12.07 -0.03 5.33 15 10 H 0.03 1.83 8.10 -2.39 -0.02 1.81 15 11 C -0.11 -3.86 5.24 30.79 0.16 -3.70 15 12 C -0.13 -3.33 5.95 30.75 0.18 -3.14 15 13 C 0.12 3.65 7.30 86.52 0.63 4.28 15 14 N -0.40 -17.10 4.04 -338.35 -1.37 -18.47 15 15 N -0.37 -16.10 12.74 -60.96 -0.78 -16.88 15 16 C 0.16 7.26 13.04 180.62 2.35 9.61 15 17 N -0.54 -28.97 9.25 -191.33 -1.77 -30.74 15 18 C 0.30 15.21 6.92 138.37 0.96 16.16 15 19 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 20 H 0.06 2.04 8.08 -2.39 -0.02 2.02 15 21 H 0.09 2.75 8.14 -2.38 -0.02 2.73 15 22 H 0.13 2.24 8.14 -2.38 -0.02 2.22 15 23 H 0.07 1.84 8.12 -2.39 -0.02 1.82 15 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 26 H 0.23 8.29 8.06 -2.91 -0.02 8.26 15 Total: -1.00 -68.76 223.90 4.43 -64.33 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.17 Total: 4.15 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.89 Total: 1.55 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.66 Total: -116.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.76 4.43 -64.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006162.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.998 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds