Wall clock time and date at job start Mon Mar 30 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48498 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 299.99928 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00179 * 3 2 1 7 7 C 1.40247 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.40127 * 119.99802 * 0.27923 * 7 2 1 10 10 N 1.33024 * 126.65430 * 359.40915 * 9 7 2 11 11 N 1.28573 * 109.35094 * 179.82494 * 10 9 7 12 12 C 1.31308 * 110.20556 * 0.44852 * 11 10 9 13 13 N 1.35295 * 107.84719 * 359.72872 * 12 11 10 14 14 C 1.46504 * 127.04961 * 180.02562 * 13 12 11 15 15 C 1.53781 * 113.61187 * 37.47459 * 14 13 12 16 16 C 1.53782 * 87.07659 * 220.01623 * 15 14 13 17 17 C 1.53777 * 113.61656 * 299.97014 * 14 13 12 18 18 H 0.96996 * 120.00337 * 0.02562 * 1 2 3 19 19 H 1.07998 * 126.08202 * 179.74307 * 12 11 10 20 20 H 1.09005 * 112.84831 * 168.77762 * 14 13 12 21 21 H 1.09002 * 113.61524 * 334.56305 * 15 14 13 22 22 H 1.08999 * 113.61698 * 105.47338 * 15 14 13 23 23 H 1.08999 * 113.61615 * 270.88238 * 16 15 14 24 24 H 1.09003 * 113.61516 * 139.97865 * 16 15 14 25 25 H 1.08991 * 113.61866 * 254.53036 * 17 14 13 26 26 H 1.09007 * 113.61103 * 25.43550 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0081 -1.2146 0.0005 8 1 3.0881 -1.2145 0.0001 9 6 1.3075 -2.4281 -0.0048 10 7 -0.0138 -2.5823 0.0003 11 7 -0.2964 -3.8365 -0.0110 12 6 0.8060 -4.5498 -0.0142 13 7 1.8537 -3.6938 -0.0104 14 6 3.2771 -4.0408 -0.0125 15 6 3.6104 -5.2690 -0.8758 16 6 4.5870 -5.6873 0.2360 17 6 3.7092 -4.8764 1.2040 18 1 -0.4850 0.8400 -0.0004 19 1 0.8659 -5.6281 -0.0193 20 1 3.9216 -3.1829 -0.2040 21 1 2.7724 -5.9547 -1.0017 22 1 4.1008 -5.0210 -1.8171 23 1 5.5905 -5.2804 0.1116 24 1 4.5856 -6.7584 0.4383 25 1 4.2793 -4.3116 1.9415 26 1 2.8982 -5.4548 1.6467 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025044.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:50 Heat of formation + Delta-G solvation = 65.925194 kcal Electronic energy + Delta-G solvation = -11902.780968 eV Core-core repulsion = 9789.372917 eV Total energy + Delta-G solvation = -2113.408051 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.71731 -39.39630 -35.52979 -33.56964 -31.13014 -27.59465 -26.59587 -26.11907 -22.73792 -22.25637 -19.96078 -19.23013 -17.76740 -16.67784 -16.34575 -15.96714 -15.32668 -14.89593 -14.13647 -13.49301 -13.31703 -13.18081 -12.92624 -12.78089 -12.34936 -11.94727 -11.58034 -11.42216 -11.34260 -11.32541 -10.26099 -10.23530 -9.67061 -8.47890 -6.57047 1.30836 1.41559 1.59351 1.76431 2.19094 2.45767 2.61072 3.39063 3.56992 3.72542 3.90603 3.98889 4.21015 4.56483 4.75407 4.76533 4.97777 5.01609 5.04402 5.09201 5.19290 5.41891 5.45209 5.86278 6.28516 6.39619 6.84502 7.12038 8.49316 8.85108 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.042366 B = 0.012808 C = 0.010318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.746981 B = 2185.621780 C = 2712.929796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.027 3.973 3 Si 1.003 2.997 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.481 4.481 8 H 0.097 0.903 9 C 0.303 3.697 10 N -0.402 5.402 11 N -0.366 5.366 12 C 0.074 3.926 13 N -0.510 5.510 14 C 0.104 3.896 15 C -0.141 4.141 16 C -0.112 4.112 17 C -0.146 4.146 18 H 0.282 0.718 19 H 0.222 0.778 20 H 0.109 0.891 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.576 -5.844 0.139 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.521 4.521 8 H 0.115 0.885 9 C 0.056 3.944 10 N -0.247 5.247 11 N -0.205 5.205 12 C -0.214 4.214 13 N -0.208 5.208 14 C 0.000 4.000 15 C -0.179 4.179 16 C -0.149 4.149 17 C -0.185 4.185 18 H 0.092 0.908 19 H 0.238 0.762 20 H 0.127 0.873 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.120 0.880 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.835 -5.463 0.142 12.135 hybrid contribution 1.060 0.373 0.004 1.124 sum 11.895 -5.090 0.146 12.940 Atomic orbital electron populations 1.70126 1.09382 1.29693 1.32908 1.26973 0.95621 1.04697 0.91927 0.84861 0.79257 0.74983 0.78657 1.16878 1.19245 1.19267 1.18641 0.94460 0.87769 1.51209 0.88521 1.22104 0.89852 0.86353 0.96119 1.75460 1.11062 1.06247 1.31900 1.73924 1.26666 1.00822 1.19108 1.25842 0.83919 0.98713 1.12920 1.46433 1.07561 1.05642 1.61201 1.23152 0.78392 0.98327 1.00137 1.23378 1.00281 0.95442 0.98792 1.22638 0.97688 1.01198 0.93400 1.23403 1.00101 0.98289 0.96720 0.90806 0.76193 0.87299 0.89595 0.90078 0.87989 0.88711 0.90613 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.89 11.95 21.88 0.26 -46.62 15 2 C 0.03 1.46 5.50 85.35 0.47 1.93 15 3 Si 1.00 39.04 29.56 68.60 2.03 41.07 15 4 H -0.25 -8.76 7.11 99.48 0.71 -8.05 15 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 15 6 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 7 C -0.48 -26.55 9.10 23.22 0.21 -26.34 15 8 H 0.10 4.77 7.03 -2.91 -0.02 4.75 15 9 C 0.30 17.67 7.53 133.51 1.01 18.67 15 10 N -0.40 -25.97 10.53 -55.14 -0.58 -26.55 15 11 N -0.37 -21.42 12.21 -59.68 -0.73 -22.15 15 12 C 0.07 3.47 11.57 179.95 2.08 5.55 15 13 N -0.51 -23.99 2.99 -500.45 -1.50 -25.49 15 14 C 0.10 3.55 4.55 45.52 0.21 3.75 15 15 C -0.14 -3.53 7.65 31.12 0.24 -3.30 15 16 C -0.11 -2.12 8.08 31.12 0.25 -1.87 15 17 C -0.15 -3.92 7.77 31.12 0.24 -3.68 15 18 H 0.28 14.97 8.29 -92.71 -0.77 14.20 15 19 H 0.22 7.89 7.51 -2.91 -0.02 7.87 15 20 H 0.11 3.76 7.19 -2.38 -0.02 3.74 15 21 H 0.09 2.18 7.00 -2.39 -0.02 2.16 15 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.08 2.19 7.93 -2.38 -0.02 2.17 15 Total: -1.00 -75.54 227.83 5.37 -70.17 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.18 Total: 14.85 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.71 Total: -5.27 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -2.54 Total: -120.81 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -75.54 5.37 -70.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025044.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.092 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds