Wall clock time and date at job start Mon Mar 30 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86805 * 119.99929 * 2 1 4 4 H 1.48493 * 109.47068 * 269.99829 * 3 2 1 5 5 H 1.48499 * 109.47172 * 30.00134 * 3 2 1 6 6 H 1.48497 * 109.46697 * 149.99836 * 3 2 1 7 7 C 1.40164 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.40229 * 120.00022 * 359.97438 * 7 2 1 10 10 N 1.37753 * 126.74521 * 0.02562 * 9 7 2 11 11 H 0.97007 * 126.16300 * 359.95641 * 10 9 7 12 12 N 1.40288 * 107.67848 * 179.97438 * 10 9 7 13 13 C 1.30457 * 109.06822 * 359.93987 * 12 10 9 14 14 C 1.38844 * 126.73977 * 179.97438 * 9 7 2 15 15 C 1.50767 * 128.94136 * 0.14134 * 14 9 7 16 16 N 1.47337 * 108.08211 * 163.71823 * 15 14 9 17 17 C 1.46881 * 111.58033 * 51.64372 * 16 15 14 18 18 C 1.50966 * 128.64193 * 180.33726 * 13 12 10 19 19 H 0.97004 * 119.99565 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.73678 * 44.07632 * 15 14 9 21 21 H 1.08999 * 109.74082 * 283.36679 * 15 14 9 22 22 H 1.00901 * 111.00086 * 176.01793 * 16 15 14 23 23 H 1.09002 * 109.40427 * 47.40871 * 17 16 15 24 24 H 1.08997 * 109.40365 * 167.24499 * 17 16 15 25 25 H 1.08996 * 109.71015 * 44.17276 * 18 13 12 26 26 H 1.09004 * 109.81174 * 283.33919 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0464 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5391 1.4401 0.7001 7 6 2.0084 -1.2139 0.0005 8 1 3.0884 -1.2138 0.0001 9 6 1.3072 -2.4283 0.0016 10 7 -0.0608 -2.5900 0.0018 11 1 -0.7212 -1.8795 0.0017 12 7 -0.3269 -3.9674 0.0024 13 6 0.8029 -4.6198 0.0013 14 6 1.8555 -3.7039 0.0018 15 6 3.3070 -4.1114 0.0037 16 7 3.3833 -5.5296 0.3958 17 6 2.4876 -6.3636 -0.4164 18 6 1.0296 -6.1123 -0.0055 19 1 -0.4850 0.8401 0.0004 20 1 3.8596 -3.5017 0.7185 21 1 3.7271 -3.9821 -0.9937 22 1 4.3330 -5.8672 0.3488 23 1 2.6163 -6.1140 -1.4696 24 1 2.7312 -7.4145 -0.2609 25 1 0.3586 -6.5828 -0.7240 26 1 0.8493 -6.5179 0.9901 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051735.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:58 Heat of formation + Delta-G solvation = 48.754278 kcal Electronic energy + Delta-G solvation = -11916.514517 eV Core-core repulsion = 9802.361879 eV Total energy + Delta-G solvation = -2114.152638 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.27407 -35.93492 -33.75651 -31.01313 -29.13735 -28.42530 -25.48213 -23.35518 -21.44586 -19.77372 -17.57097 -17.14747 -15.32955 -15.16497 -14.56895 -14.16047 -13.46616 -12.76595 -12.59814 -12.28093 -11.74524 -11.45744 -11.40039 -11.18548 -10.95803 -10.58624 -10.36905 -9.92144 -9.55533 -8.73324 -7.86753 -7.69117 -7.04555 -6.83870 -4.59585 2.86084 2.99512 3.04903 3.68905 3.81223 4.16491 4.80797 4.91139 5.22960 5.65050 5.78442 6.00304 6.24590 6.36359 6.45857 6.57406 6.75893 6.95889 7.11792 7.36262 7.45706 7.76062 7.86816 8.10879 8.36407 8.60734 8.68771 9.49287 9.75986 10.04331 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.058051 B = 0.011792 C = 0.009946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.214704 B = 2373.845522 C = 2814.503177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.070 3.930 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.094 0.906 9 C 0.282 3.718 10 N -0.494 5.494 11 H 0.439 0.561 12 N -0.383 5.383 13 C 0.086 3.914 14 C -0.385 4.385 15 C 0.172 3.828 16 N -0.691 5.691 17 C 0.071 3.929 18 C -0.026 4.026 19 H 0.290 0.710 20 H 0.061 0.939 21 H 0.009 0.991 22 H 0.329 0.671 23 H 0.028 0.972 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -3.159 -0.921 5.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.145 4.145 3 Si 0.758 3.242 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.112 0.888 9 C 0.157 3.843 10 N -0.214 5.214 11 H 0.292 0.708 12 N -0.207 5.207 13 C -0.079 4.079 14 C -0.398 4.398 15 C 0.043 3.957 16 N -0.321 5.321 17 C -0.060 4.060 18 C -0.066 4.066 19 H 0.101 0.899 20 H 0.079 0.921 21 H 0.027 0.973 22 H 0.145 0.855 23 H 0.046 0.954 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.832 -3.088 -0.412 4.210 hybrid contribution 1.282 1.312 -0.825 2.012 sum 4.114 -1.776 -1.238 4.649 Atomic orbital electron populations 1.68810 1.07930 1.30283 1.39962 1.26059 0.94840 1.02168 0.91413 0.85874 0.80034 0.79056 0.79241 1.19316 1.20145 1.18328 1.18946 0.95040 0.88152 1.45774 0.88794 1.18084 0.83174 0.92946 0.90113 1.47278 1.06201 1.03989 1.63948 0.70803 1.76437 1.22679 0.89110 1.32464 1.21245 0.91467 0.94789 1.00358 1.19482 0.93708 0.91670 1.34985 1.19754 0.94045 0.86080 0.95863 1.60214 1.10460 1.03646 1.57786 1.21784 0.93563 0.95827 0.94795 1.19952 0.95034 0.90508 1.01109 0.89879 0.92099 0.97267 0.85462 0.95404 0.91704 0.91658 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.03 10.75 55.56 0.60 -20.43 15 2 C 0.07 1.72 5.50 -17.28 -0.10 1.63 15 3 Si 0.93 18.33 29.56 -169.99 -5.03 13.30 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.32 7.11 56.52 0.40 -4.91 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.44 -11.66 9.23 -38.11 -0.35 -12.01 15 8 H 0.09 2.33 7.85 -52.49 -0.41 1.92 15 9 C 0.28 7.86 6.76 -84.23 -0.57 7.29 15 10 N -0.49 -13.88 7.12 32.29 0.23 -13.65 15 11 H 0.44 12.09 6.37 -182.45 -1.16 10.93 15 12 N -0.38 -10.51 12.63 33.62 0.42 -10.09 15 13 C 0.09 2.19 7.15 -82.56 -0.59 1.60 15 14 C -0.39 -10.02 6.07 -103.88 -0.63 -10.65 15 15 C 0.17 3.71 6.80 -4.70 -0.03 3.68 15 16 N -0.69 -12.70 6.79 -114.39 -0.78 -13.48 15 17 C 0.07 1.21 6.49 -3.55 -0.02 1.19 15 18 C -0.03 -0.52 6.52 -27.47 -0.18 -0.70 15 19 H 0.29 6.57 8.29 -40.82 -0.34 6.23 15 20 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 15 22 H 0.33 4.88 8.90 -39.29 -0.35 4.53 15 23 H 0.03 0.49 8.06 -51.93 -0.42 0.07 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 222.86 15.07 3.36 3.36 Total: -1.00 -29.54 222.86 -7.25 -36.80 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -3.59 Total: 12.17 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.47 Total: -7.99 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.47 Total: -57.65 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.54 -7.25 -36.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051735.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.552 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds