Wall clock time and date at job start Mon Mar 30 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86805 * 119.99929 * 2 1 4 4 H 1.48493 * 109.47068 * 269.99829 * 3 2 1 5 5 H 1.48499 * 109.47172 * 30.00134 * 3 2 1 6 6 H 1.48497 * 109.46697 * 149.99836 * 3 2 1 7 7 C 1.40164 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.40229 * 120.00022 * 359.97438 * 7 2 1 10 10 N 1.37753 * 126.74521 * 0.02562 * 9 7 2 11 11 H 0.97007 * 126.16300 * 359.95641 * 10 9 7 12 12 N 1.40288 * 107.67848 * 179.97438 * 10 9 7 13 13 C 1.30457 * 109.06822 * 359.93987 * 12 10 9 14 14 C 1.38844 * 126.73977 * 179.97438 * 9 7 2 15 15 C 1.50767 * 128.94136 * 0.14134 * 14 9 7 16 16 N 1.47337 * 108.08211 * 163.71823 * 15 14 9 17 17 C 1.46881 * 111.58033 * 51.64372 * 16 15 14 18 18 C 1.50966 * 128.64193 * 180.33726 * 13 12 10 19 19 H 0.97004 * 119.99565 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.73678 * 44.07632 * 15 14 9 21 21 H 1.08999 * 109.74082 * 283.36679 * 15 14 9 22 22 H 1.00901 * 111.00086 * 176.01793 * 16 15 14 23 23 H 1.09002 * 109.40427 * 47.40871 * 17 16 15 24 24 H 1.08997 * 109.40365 * 167.24499 * 17 16 15 25 25 H 1.08996 * 109.71015 * 44.17276 * 18 13 12 26 26 H 1.09004 * 109.81174 * 283.33919 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0464 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5391 1.4401 0.7001 7 6 2.0084 -1.2139 0.0005 8 1 3.0884 -1.2138 0.0001 9 6 1.3072 -2.4283 0.0016 10 7 -0.0608 -2.5900 0.0018 11 1 -0.7212 -1.8795 0.0017 12 7 -0.3269 -3.9674 0.0024 13 6 0.8029 -4.6198 0.0013 14 6 1.8555 -3.7039 0.0018 15 6 3.3070 -4.1114 0.0037 16 7 3.3833 -5.5296 0.3958 17 6 2.4876 -6.3636 -0.4164 18 6 1.0296 -6.1123 -0.0055 19 1 -0.4850 0.8401 0.0004 20 1 3.8596 -3.5017 0.7185 21 1 3.7271 -3.9821 -0.9937 22 1 4.3330 -5.8672 0.3488 23 1 2.6163 -6.1140 -1.4696 24 1 2.7312 -7.4145 -0.2609 25 1 0.3586 -6.5828 -0.7240 26 1 0.8493 -6.5179 0.9901 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051735.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:58 Heat of formation + Delta-G solvation = 26.501207 kcal Electronic energy + Delta-G solvation = -11917.479483 eV Core-core repulsion = 9802.361879 eV Total energy + Delta-G solvation = -2115.117603 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.18932 -37.54271 -35.66004 -32.77037 -31.00787 -30.21897 -27.40672 -25.10675 -23.04225 -21.68959 -19.44257 -19.04259 -17.13065 -16.85165 -16.23350 -15.82428 -15.08101 -14.56673 -14.35100 -13.98722 -13.52879 -13.21818 -13.03658 -12.80758 -12.59700 -12.24479 -11.98499 -11.60764 -11.35345 -10.69164 -9.77751 -9.29614 -8.90654 -8.80816 -6.59457 1.22434 1.38959 1.55271 1.82134 2.16010 2.26678 2.86490 3.23760 3.50141 4.13594 4.25743 4.56361 4.73645 4.78480 4.83737 4.99576 5.10019 5.22509 5.32290 5.45443 5.61418 5.90053 6.21117 6.35915 6.65616 6.71685 6.86976 7.44976 7.72672 8.19263 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.058051 B = 0.011792 C = 0.009946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.214704 B = 2373.845522 C = 2814.503177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.029 3.971 3 Si 1.013 2.987 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.471 4.471 8 H 0.101 0.899 9 C 0.247 3.753 10 N -0.513 5.513 11 H 0.433 0.567 12 N -0.417 5.417 13 C 0.077 3.923 14 C -0.410 4.410 15 C 0.178 3.822 16 N -0.693 5.693 17 C 0.074 3.926 18 C -0.028 4.028 19 H 0.300 0.700 20 H 0.058 0.942 21 H 0.013 0.987 22 H 0.353 0.647 23 H 0.024 0.976 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.277 -3.342 -0.969 7.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.184 4.184 3 Si 0.832 3.168 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.507 4.507 8 H 0.119 0.881 9 C 0.123 3.877 10 N -0.233 5.233 11 H 0.285 0.715 12 N -0.241 5.241 13 C -0.087 4.087 14 C -0.423 4.423 15 C 0.049 3.951 16 N -0.326 5.326 17 C -0.056 4.056 18 C -0.068 4.068 19 H 0.112 0.888 20 H 0.076 0.924 21 H 0.031 0.969 22 H 0.172 0.828 23 H 0.042 0.958 24 H 0.129 0.871 25 H 0.101 0.899 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.344 -3.315 -0.461 5.484 hybrid contribution 0.759 1.349 -0.805 1.745 sum 5.103 -1.966 -1.266 5.613 Atomic orbital electron populations 1.68850 1.09420 1.31861 1.39073 1.27112 0.95650 1.05650 0.89976 0.84718 0.78655 0.73852 0.79597 1.18480 1.19183 1.17600 1.19290 0.95594 0.88803 1.47038 0.88074 1.18737 0.83445 0.94626 0.90921 1.47362 1.06389 1.04291 1.65244 0.71458 1.76372 1.24196 0.89096 1.34436 1.22183 0.90654 0.97527 0.98379 1.20118 0.96131 0.91315 1.34720 1.19626 0.91295 0.88194 0.96028 1.60091 1.12432 1.02077 1.57967 1.21860 0.91503 0.98025 0.94215 1.20213 0.97508 0.86776 1.02295 0.88825 0.92407 0.96907 0.82793 0.95776 0.87071 0.89935 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.64 10.75 21.87 0.24 -43.40 15 2 C 0.03 1.41 5.50 85.32 0.47 1.87 15 3 Si 1.01 36.72 29.56 68.60 2.03 38.75 15 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 5 H -0.27 -9.24 7.11 99.48 0.71 -8.53 15 6 H -0.25 -8.82 7.11 99.48 0.71 -8.12 15 7 C -0.47 -25.16 9.23 23.22 0.21 -24.95 15 8 H 0.10 5.06 7.85 -2.91 -0.02 5.03 15 9 C 0.25 14.12 6.76 38.84 0.26 14.38 15 10 N -0.51 -29.82 7.12 -51.76 -0.37 -30.19 15 11 H 0.43 24.88 6.37 -213.19 -1.36 23.53 15 12 N -0.42 -23.43 12.63 -47.56 -0.60 -24.03 15 13 C 0.08 3.91 7.15 43.16 0.31 4.22 15 14 C -0.41 -21.49 6.07 -19.39 -0.12 -21.61 15 15 C 0.18 7.54 6.80 85.49 0.58 8.12 15 16 N -0.69 -23.67 6.79 -515.82 -3.50 -27.17 15 17 C 0.07 2.30 6.49 86.49 0.56 2.86 15 18 C -0.03 -1.07 6.52 30.11 0.20 -0.87 15 19 H 0.30 13.59 8.29 -92.71 -0.77 12.82 15 20 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 21 H 0.01 0.53 8.14 -2.39 -0.02 0.52 15 22 H 0.35 9.26 8.90 -89.69 -0.80 8.46 15 23 H 0.02 0.78 8.06 -2.39 -0.02 0.76 15 24 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.08 2.79 8.14 -2.39 -0.02 2.78 15 26 H 0.08 2.89 8.14 -2.38 -0.02 2.87 15 Total: -1.00 -64.73 222.86 -0.68 -65.41 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.94 Total: 36.62 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 2.48 Total: -15.98 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -4.24 Total: -124.79 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -64.73 -0.68 -65.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051735.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.907 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds