Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47078 * 60.00722 * 9 7 2 11 11 C 1.53165 * 109.46707 * 180.02562 * 9 7 2 12 12 C 1.53425 * 109.25536 * 189.18119 * 11 9 7 13 13 C 1.50936 * 108.19820 * 311.30374 * 12 11 9 14 14 N 1.30329 * 127.89800 * 195.95053 * 13 12 11 15 15 C 1.33471 * 109.72045 * 179.97438 * 14 13 12 16 16 N 1.30975 * 109.00943 * 0.02562 * 15 14 13 17 17 N 1.34671 * 124.05552 * 15.95290 * 13 12 11 18 18 C 1.46304 * 125.04697 * 0.11676 * 17 13 12 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.50388 * 309.11113 * 11 9 7 21 21 H 1.08995 * 109.50337 * 69.24389 * 11 9 7 22 22 H 1.08997 * 109.71912 * 70.98188 * 12 11 9 23 23 H 1.09000 * 109.71871 * 191.63243 * 12 11 9 24 24 H 1.08001 * 125.49474 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.58604 * 257.24959 * 18 17 13 26 26 H 1.08990 * 109.59087 * 136.81769 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 6 2.2464 -3.6633 -0.0005 12 6 1.4884 -4.9771 -0.2316 13 6 0.3101 -5.0135 0.7109 14 7 -0.4151 -6.0431 1.0464 15 6 -1.3642 -5.6648 1.9053 16 7 -1.2514 -4.3788 2.1264 17 7 -0.1698 -3.9357 1.3602 18 6 0.3693 -2.5801 1.2510 19 1 -0.4850 0.8401 0.0004 20 1 2.9755 -3.5187 -0.7977 21 1 2.7596 -3.7033 0.9602 22 1 1.1365 -5.0222 -1.2622 23 1 2.1469 -5.8219 -0.0299 24 1 -2.1055 -6.3144 2.3467 25 1 0.9664 -2.3521 2.1340 26 1 -0.4503 -1.8665 1.1673 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055229.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = 54.353452 kcal Electronic energy + Delta-G solvation = -11985.632969 eV Core-core repulsion = 9871.723129 eV Total energy + Delta-G solvation = -2113.909839 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.13635 -38.09704 -34.64488 -33.92233 -31.49760 -30.28666 -27.04884 -24.85216 -23.15064 -22.65631 -20.06978 -18.52358 -17.52675 -16.85711 -16.51816 -15.61103 -15.47457 -14.91666 -14.62833 -14.16270 -13.54064 -13.07872 -12.91460 -12.69446 -12.53605 -12.36526 -11.65591 -11.25235 -11.22995 -10.98053 -10.74497 -10.47971 -10.31247 -8.22343 -6.37219 0.77712 1.44111 1.46748 1.54481 1.60238 2.00370 2.40329 3.09147 3.21525 3.82771 3.96071 4.15789 4.34658 4.53568 4.55008 4.81394 4.88894 5.07036 5.09420 5.45850 5.50286 5.58333 5.62596 5.77749 5.91296 6.21053 6.75064 7.21443 7.34569 8.83930 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.065069 B = 0.011051 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.212295 B = 2533.025355 C = 2851.967725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.290 1.290 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.038 3.962 10 H 0.011 0.989 11 C -0.109 4.109 12 C -0.035 4.035 13 C 0.266 3.734 14 N -0.569 5.569 15 C 0.183 3.817 16 N -0.370 5.370 17 N -0.373 5.373 18 C 0.140 3.860 19 H 0.265 0.735 20 H 0.095 0.905 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.123 0.877 24 H 0.252 0.748 25 H 0.060 0.940 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -6.454 0.260 7.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.216 1.216 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.018 3.982 10 H 0.029 0.971 11 C -0.147 4.147 12 C -0.075 4.075 13 C -0.010 4.010 14 N -0.299 5.299 15 C -0.119 4.119 16 N -0.199 5.199 17 N -0.162 5.162 18 C 0.019 3.981 19 H 0.074 0.926 20 H 0.113 0.887 21 H 0.079 0.921 22 H 0.123 0.877 23 H 0.141 0.859 24 H 0.267 0.733 25 H 0.078 0.922 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.724 -6.143 0.644 6.750 hybrid contribution -0.101 1.280 0.140 1.292 sum 2.624 -4.863 0.783 5.580 Atomic orbital electron populations 1.69980 1.07576 1.28020 1.50434 1.25881 0.95586 1.03097 0.93992 0.85515 0.78209 0.78248 0.79198 1.21633 1.19339 1.19066 1.21384 0.93819 0.90191 1.51428 0.90621 1.19032 0.93027 0.95066 0.91110 0.97079 1.21738 0.98153 0.91887 1.02956 1.20606 0.90047 1.00660 0.96140 1.25046 0.97651 0.82757 0.95570 1.70272 1.09888 1.30027 1.19708 1.26761 0.98460 0.90952 0.95757 1.77813 1.07270 1.14887 1.19890 1.50858 1.22075 1.11082 1.32234 1.22381 0.98571 0.76156 1.00969 0.92586 0.88653 0.92067 0.87719 0.85874 0.73268 0.92151 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.69 11.45 21.45 0.25 -50.45 15 2 C 0.01 0.73 5.30 84.66 0.45 1.18 15 3 Si 0.96 40.47 29.54 68.60 2.03 42.50 15 4 H -0.29 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 7 C -0.53 -26.14 8.53 25.60 0.22 -25.92 15 8 H 0.08 3.52 7.74 -2.91 -0.02 3.50 15 9 C 0.04 1.72 2.12 -11.38 -0.02 1.69 15 10 H 0.01 0.57 8.12 -2.38 -0.02 0.55 15 11 C -0.11 -3.82 5.20 30.79 0.16 -3.66 15 12 C -0.04 -1.10 6.33 30.07 0.19 -0.90 15 13 C 0.27 10.45 7.72 138.37 1.07 11.51 15 14 N -0.57 -21.71 11.18 -191.33 -2.14 -23.85 15 15 C 0.18 6.59 13.04 180.62 2.35 8.94 15 16 N -0.37 -16.03 12.74 -60.96 -0.78 -16.81 15 17 N -0.37 -16.66 4.04 -338.32 -1.37 -18.02 15 18 C 0.14 6.69 6.20 86.52 0.54 7.23 15 19 H 0.27 14.05 8.31 -92.71 -0.77 13.28 15 20 H 0.09 2.96 8.12 -2.39 -0.02 2.94 15 21 H 0.06 2.10 8.12 -2.39 -0.02 2.08 15 22 H 0.10 3.00 8.14 -2.39 -0.02 2.98 15 23 H 0.12 3.02 8.14 -2.39 -0.02 3.00 15 24 H 0.25 6.24 8.06 -2.91 -0.02 6.22 15 25 H 0.06 2.89 8.12 -2.39 -0.02 2.87 15 26 H 0.08 4.51 6.42 -2.39 -0.02 4.50 15 Total: -1.00 -60.63 224.01 4.11 -56.52 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.17 Total: 10.04 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.95 Total: 0.08 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.04 Total: -109.13 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -60.63 4.11 -56.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055229.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.870 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds