Wall clock time and date at job start Mon Mar 30 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99704 * 2 1 4 4 H 1.48499 * 109.47049 * 240.00161 * 3 2 1 5 5 H 1.48498 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47256 * 120.00119 * 3 2 1 7 7 C 1.37871 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99933 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47181 * 300.01129 * 9 7 2 11 11 C 1.53158 * 109.46620 * 180.02562 * 9 7 2 12 12 C 1.53296 * 109.38125 * 170.95786 * 11 9 7 13 13 C 1.50925 * 108.26772 * 48.39548 * 12 11 9 14 14 N 1.30333 * 127.90555 * 164.13108 * 13 12 11 15 15 C 1.33465 * 109.72473 * 180.31230 * 14 13 12 16 16 N 1.30971 * 109.01142 * 359.97438 * 15 14 13 17 17 N 1.34685 * 124.05278 * 344.43848 * 13 12 11 18 18 C 1.46301 * 125.04269 * 359.63538 * 17 13 12 19 19 H 0.96995 * 119.99963 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.50772 * 290.75298 * 11 9 7 21 21 H 1.09000 * 109.51144 * 50.83952 * 11 9 7 22 22 H 1.08996 * 109.37612 * 288.87114 * 12 11 9 23 23 H 1.09007 * 109.99362 * 168.26774 * 12 11 9 24 24 H 1.08008 * 125.49561 * 180.02562 * 15 14 13 25 25 H 1.09005 * 109.57960 * 102.76865 * 18 17 13 26 26 H 1.09001 * 109.58407 * 223.04580 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8895 11 6 2.2466 -3.6631 -0.0005 12 6 1.4918 -4.9779 0.2267 13 6 0.3105 -5.0136 -0.7118 14 7 -0.4146 -6.0432 -1.0477 15 6 -1.3631 -5.6652 -1.9071 16 7 -1.2504 -4.3792 -2.1284 17 7 -0.1695 -3.9357 -1.3614 18 6 0.3695 -2.5801 -1.2520 19 1 -0.4850 0.8400 -0.0004 20 1 2.7599 -3.7031 -0.9614 21 1 2.9763 -3.5181 0.7961 22 1 1.1433 -5.0211 1.2586 23 1 2.1482 -5.8243 0.0240 24 1 -2.1047 -6.3148 -2.3483 25 1 0.9665 -2.3520 -2.1350 26 1 -0.4503 -1.8663 -1.1709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055230.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:50 Heat of formation + Delta-G solvation = 70.310197 kcal Electronic energy + Delta-G solvation = -11984.907618 eV Core-core repulsion = 9871.689715 eV Total energy + Delta-G solvation = -2113.217903 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.54173 -36.42400 -32.84744 -32.28529 -29.82266 -28.63570 -25.19417 -23.24419 -21.47633 -21.05990 -18.43621 -16.62660 -15.87306 -15.21655 -14.72587 -14.05199 -13.91035 -13.35714 -12.96295 -12.43505 -11.88864 -11.38681 -11.30069 -11.03066 -10.80738 -10.65021 -10.01097 -9.55894 -9.47740 -9.29567 -8.97083 -8.79198 -8.53218 -6.29168 -4.37751 2.37021 3.15688 3.24364 3.25671 3.28243 3.53108 4.23127 4.65282 5.02623 5.30973 5.44780 5.61390 5.89995 5.98338 6.28912 6.31930 6.50709 6.63168 6.64887 7.06544 7.13763 7.27990 7.41021 7.56156 7.72522 8.06233 8.66969 8.80272 9.30323 10.78166 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.065073 B = 0.011051 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.183145 B = 2533.205967 C = 2852.212885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.067 0.933 9 C 0.039 3.961 10 H 0.040 0.960 11 C -0.119 4.119 12 C -0.040 4.040 13 C 0.269 3.731 14 N -0.562 5.562 15 C 0.171 3.829 16 N -0.331 5.331 17 N -0.350 5.350 18 C 0.124 3.876 19 H 0.268 0.732 20 H 0.057 0.943 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.207 0.793 25 H 0.068 0.932 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -5.381 -0.467 5.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.019 3.981 10 H 0.058 0.942 11 C -0.157 4.157 12 C -0.080 4.080 13 C -0.007 4.007 14 N -0.292 5.292 15 C -0.132 4.132 16 N -0.161 5.161 17 N -0.140 5.140 18 C 0.004 3.996 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.223 0.777 25 H 0.086 0.914 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.531 -5.053 -0.852 5.348 hybrid contribution 0.318 1.035 -0.068 1.085 sum 1.849 -4.017 -0.920 4.517 Atomic orbital electron populations 1.69826 1.06096 1.27633 1.49066 1.25089 0.94977 0.99794 0.94141 0.86479 0.79506 0.82220 0.78873 1.20003 1.21120 1.19942 1.20973 0.93228 0.89253 1.52360 0.91485 1.19078 0.92619 0.93600 0.92787 0.94177 1.21824 0.98959 0.92935 1.01998 1.20405 0.90876 1.00400 0.96300 1.24247 0.97162 0.83325 0.96012 1.70174 1.09478 1.30318 1.19203 1.25837 0.98710 0.91422 0.97211 1.77838 1.06527 1.13264 1.18434 1.50955 1.21120 1.11150 1.30766 1.22829 0.99861 0.75827 1.01034 0.92199 0.92448 0.90588 0.89200 0.89344 0.77655 0.91365 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 11.46 55.43 0.64 -23.18 15 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 15 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.52 -12.88 8.53 -34.44 -0.29 -13.18 15 8 H 0.07 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.04 0.89 2.12 -91.54 -0.19 0.70 15 10 H 0.04 1.00 8.12 -51.93 -0.42 0.58 15 11 C -0.12 -2.20 5.19 -26.50 -0.14 -2.34 15 12 C -0.04 -0.68 6.33 -27.62 -0.17 -0.86 15 13 C 0.27 5.51 7.72 -155.77 -1.20 4.31 15 14 N -0.56 -11.36 11.18 -11.83 -0.13 -11.50 15 15 C 0.17 3.25 13.04 -91.40 -1.19 2.06 15 16 N -0.33 -7.25 12.74 29.38 0.37 -6.87 15 17 N -0.35 -7.84 4.04 -58.29 -0.24 -8.08 15 18 C 0.12 2.90 6.19 -4.00 -0.02 2.88 15 19 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 20 H 0.06 1.05 8.12 -51.92 -0.42 0.63 15 21 H 0.08 1.29 8.12 -51.93 -0.42 0.87 15 22 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.09 1.28 8.14 -51.92 -0.42 0.85 15 24 H 0.21 2.91 8.06 -52.48 -0.42 2.49 15 25 H 0.07 1.59 8.12 -51.93 -0.42 1.17 15 26 H 0.12 3.05 6.43 -51.93 -0.33 2.72 15 LS Contribution 224.01 15.07 3.38 3.38 Total: -1.00 -28.19 224.01 -7.15 -35.34 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.83 Total: 1.07 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.31 Total: -4.91 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.64 Total: -49.63 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.19 -7.15 -35.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055230.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.647 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds