Wall clock time and date at job start Mon Mar 30 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99704 * 2 1 4 4 H 1.48499 * 109.47049 * 240.00161 * 3 2 1 5 5 H 1.48498 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47256 * 120.00119 * 3 2 1 7 7 C 1.37871 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99933 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47181 * 300.01129 * 9 7 2 11 11 C 1.53158 * 109.46620 * 180.02562 * 9 7 2 12 12 C 1.53296 * 109.38125 * 170.95786 * 11 9 7 13 13 C 1.50925 * 108.26772 * 48.39548 * 12 11 9 14 14 N 1.30333 * 127.90555 * 164.13108 * 13 12 11 15 15 C 1.33465 * 109.72473 * 180.31230 * 14 13 12 16 16 N 1.30971 * 109.01142 * 359.97438 * 15 14 13 17 17 N 1.34685 * 124.05278 * 344.43848 * 13 12 11 18 18 C 1.46301 * 125.04269 * 359.63538 * 17 13 12 19 19 H 0.96995 * 119.99963 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.50772 * 290.75298 * 11 9 7 21 21 H 1.09000 * 109.51144 * 50.83952 * 11 9 7 22 22 H 1.08996 * 109.37612 * 288.87114 * 12 11 9 23 23 H 1.09007 * 109.99362 * 168.26774 * 12 11 9 24 24 H 1.08008 * 125.49561 * 180.02562 * 15 14 13 25 25 H 1.09005 * 109.57960 * 102.76865 * 18 17 13 26 26 H 1.09001 * 109.58407 * 223.04580 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8895 11 6 2.2466 -3.6631 -0.0005 12 6 1.4918 -4.9779 0.2267 13 6 0.3105 -5.0136 -0.7118 14 7 -0.4146 -6.0432 -1.0477 15 6 -1.3631 -5.6652 -1.9071 16 7 -1.2504 -4.3792 -2.1284 17 7 -0.1695 -3.9357 -1.3614 18 6 0.3695 -2.5801 -1.2520 19 1 -0.4850 0.8400 -0.0004 20 1 2.7599 -3.7031 -0.9614 21 1 2.9763 -3.5181 0.7961 22 1 1.1433 -5.0211 1.2586 23 1 2.1482 -5.8243 0.0240 24 1 -2.1047 -6.3148 -2.3483 25 1 0.9665 -2.3520 -2.1350 26 1 -0.4503 -1.8663 -1.1709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055230.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:50 Heat of formation + Delta-G solvation = 54.316132 kcal Electronic energy + Delta-G solvation = -11985.601173 eV Core-core repulsion = 9871.689715 eV Total energy + Delta-G solvation = -2113.911458 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.13606 -38.10087 -34.64732 -33.92445 -31.49848 -30.29138 -27.05016 -24.85123 -23.15315 -22.65757 -20.06627 -18.52461 -17.52837 -16.86012 -16.51798 -15.61084 -15.47532 -14.91565 -14.63187 -14.16413 -13.54634 -13.07662 -12.91523 -12.69115 -12.53462 -12.36707 -11.65299 -11.25388 -11.23444 -10.98122 -10.74497 -10.47854 -10.31195 -8.22327 -6.37268 0.77628 1.44066 1.46807 1.54477 1.60167 2.00350 2.40319 3.09166 3.21410 3.82764 3.96351 4.15303 4.34993 4.53281 4.54783 4.81685 4.88837 5.06814 5.09572 5.45833 5.50300 5.58254 5.62579 5.77679 5.91234 6.21005 6.75037 7.21412 7.34589 8.83973 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.065073 B = 0.011051 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.183145 B = 2533.205967 C = 2852.212885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.038 3.962 10 H 0.011 0.989 11 C -0.109 4.109 12 C -0.035 4.035 13 C 0.266 3.734 14 N -0.569 5.569 15 C 0.183 3.817 16 N -0.370 5.370 17 N -0.373 5.373 18 C 0.140 3.860 19 H 0.265 0.735 20 H 0.060 0.940 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.124 0.876 24 H 0.252 0.748 25 H 0.060 0.940 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -6.457 -0.263 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.018 3.982 10 H 0.029 0.971 11 C -0.147 4.147 12 C -0.075 4.075 13 C -0.010 4.010 14 N -0.299 5.299 15 C -0.119 4.119 16 N -0.199 5.199 17 N -0.163 5.163 18 C 0.020 3.980 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.114 0.886 22 H 0.122 0.878 23 H 0.142 0.858 24 H 0.267 0.733 25 H 0.078 0.922 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.730 -6.146 -0.647 6.756 hybrid contribution -0.102 1.281 -0.138 1.292 sum 2.628 -4.865 -0.786 5.585 Atomic orbital electron populations 1.69980 1.07575 1.28025 1.50441 1.25878 0.95585 1.03096 0.93991 0.85515 0.78208 0.78249 0.79199 1.19350 1.21634 1.19052 1.21381 0.93821 0.90186 1.51424 0.90616 1.19022 0.93022 0.95059 0.91109 0.97078 1.21713 0.98177 0.91879 1.02974 1.20580 0.90009 1.00632 0.96234 1.25045 0.97647 0.82756 0.95567 1.70270 1.09915 1.30016 1.19689 1.26760 0.98461 0.90955 0.95746 1.77812 1.07323 1.14880 1.19846 1.50863 1.22127 1.11084 1.32189 1.22378 0.98556 0.76147 1.00966 0.92585 0.92117 0.88632 0.87769 0.85822 0.73264 0.92168 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.70 11.46 21.45 0.25 -50.46 15 2 C 0.01 0.74 5.30 84.65 0.45 1.18 15 3 Si 0.96 40.47 29.54 68.60 2.03 42.50 15 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 5 H -0.29 -12.33 7.11 99.48 0.71 -11.63 15 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 7 C -0.53 -26.14 8.53 25.60 0.22 -25.92 15 8 H 0.08 3.52 7.74 -2.91 -0.02 3.50 15 9 C 0.04 1.73 2.12 -11.39 -0.02 1.70 15 10 H 0.01 0.57 8.12 -2.39 -0.02 0.55 15 11 C -0.11 -3.82 5.19 30.75 0.16 -3.66 15 12 C -0.04 -1.10 6.33 30.02 0.19 -0.91 15 13 C 0.27 10.45 7.72 138.36 1.07 11.52 15 14 N -0.57 -21.71 11.18 -191.33 -2.14 -23.85 15 15 C 0.18 6.59 13.04 180.62 2.35 8.95 15 16 N -0.37 -16.03 12.74 -60.96 -0.78 -16.81 15 17 N -0.37 -16.66 4.04 -338.33 -1.37 -18.03 15 18 C 0.14 6.71 6.19 86.52 0.54 7.25 15 19 H 0.27 14.06 8.31 -92.71 -0.77 13.28 15 20 H 0.06 2.08 8.12 -2.38 -0.02 2.06 15 21 H 0.10 2.97 8.12 -2.39 -0.02 2.95 15 22 H 0.10 2.99 8.14 -2.39 -0.02 2.97 15 23 H 0.12 3.03 8.14 -2.38 -0.02 3.01 15 24 H 0.25 6.24 8.06 -2.91 -0.02 6.22 15 25 H 0.06 2.88 8.12 -2.38 -0.02 2.86 15 26 H 0.08 4.50 6.43 -2.39 -0.02 4.48 15 Total: -1.00 -60.64 224.01 4.11 -56.53 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.17 Total: 10.01 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.95 Total: 0.11 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.04 Total: -109.15 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -60.64 4.11 -56.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055230.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.842 kcal (2) G-P(sol) polarization free energy of solvation -60.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds